ID 867656 - BioProject

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Accession: PRJEB55270 ID: 867656

EMG produced TPA metagenomics assembly of PRJNA787435 data set (Geographical resistome profiling in honeybee microbiome reveals resistance gene transfer conferred by mobilizable plasmids).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA787435, and was assembled with metaSPAdes v3. More...

Accession	PRJEB55270
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 9-Aug-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	2030
WGS master	38
Publications
PubMed	1
PMC	1
Other datasets
BioSample	39
Assembly	38

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

38
38

Assembly	WGS	BioSample	Taxonomy
GCA_946479175.1	CAMLEU000000000	SAMEA110698755	Bartonella apis
GCA_946482035.1	CAMLPY000000000	SAMEA110698756	Bartonella apis
GCA_946479655.1	CAMLGN000000000	SAMEA110698743	Bartonella apis
GCA_946480095.1	CAMLIE000000000	SAMEA110698745	Bifidobacterium asteroides
GCA_946480275.1	CAMLIH000000000	SAMEA110698729	Bifidobacterium asteroides
GCA_946478705.1	CAMLDB000000000	SAMEA110698728	Bifidobacterium indicum
GCA_946479375.1	CAMLFR000000000	SAMEA110698738	Frischella perrara
GCA_946479195.1	CAMLEZ000000000	SAMEA110698762	Gilliamella apicola
GCA_946479265.1	CAMLFG000000000	SAMEA110698747	Gilliamella apicola
GCA_946481655.1	CAMLOL000000000	SAMEA110698725	Gilliamella apicola
GCA_946479305.1	CAMLFL000000000	SAMEA110698735	Gilliamella apis
GCA_946479595.1	CAMLGQ000000000	SAMEA110698746	Lactobacillus apis
GCA_946479455.1	CAMLFT000000000	SAMEA110698736	Lactobacillus apis
GCA_946479235.1	CAMLFC000000000	SAMEA110698759	Lactobacillus helsingborgensis
GCA_946480415.1	CAMLJU000000000	SAMEA110698760	Morganella morganii
GCA_946480755.1	CAMLKP000000000	SAMEA110698749	Snodgrassella alvi
GCA_946481525.1	CAMLNR000000000	SAMEA110698750	Snodgrassella alvi
GCA_946479295.1	CAMLFD000000000	SAMEA110698753	uncultured Apibacter sp.
GCA_946479215.1	CAMLFA000000000	SAMEA110698748	uncultured Bartonella sp.
GCA_946478665.1	CAMLCZ000000000	SAMEA110698731	uncultured Bartonella sp.
GCA_946479495.1	CAMLGB000000000	SAMEA110698751	uncultured Bartonella sp.
GCA_946479275.1	CAMLFE000000000	SAMEA110698739	uncultured Bartonella sp.
GCA_946480265.1	CAMLHW000000000	SAMEA110698733	uncultured Commensalibacter sp.
GCA_946479355.1	CAMLFQ000000000	SAMEA110698732	uncultured Commensalibacter sp.
GCA_946480135.1	CAMLIV000000000	SAMEA110698752	uncultured Dysgonomonas sp.
GCA_946479155.1	CAMLEN000000000	SAMEA110698758	uncultured Dysgonomonas sp.
GCA_946479575.1	CAMLGH000000000	SAMEA110698726	uncultured Gilliamella sp.
GCA_946480175.1	CAMLIK000000000	SAMEA110698740	uncultured Gilliamella sp.
GCA_946480035.1	CAMLHJ000000000	SAMEA110698761	uncultured Lactobacillaceae bacterium
GCA_946480195.1	CAMLHY000000000	SAMEA110698730	uncultured Lactobacillus sp.
GCA_946479935.1	CAMLHN000000000	SAMEA110698741	uncultured Lactobacillus sp.
GCA_946481335.1	CAMLMR000000000	SAMEA110698727	uncultured Lactobacillus sp.
GCA_946479925.1	CAMLHK000000000	SAMEA110698744	uncultured Lactobacillus sp.
GCA_946479245.1	CAMLFB000000000	SAMEA110698757	uncultured Lactobacillus sp.
GCA_946480115.1	CAMLIB000000000	SAMEA110698737	uncultured Lactobacillus sp.
GCA_946479585.1	CAMLGJ000000000	SAMEA110698754	uncultured Lactobacillus sp.
GCA_946480225.1	CAMLIS000000000	SAMEA110698734	uncultured Neisseriaceae bacterium
GCA_946479555.1	CAMLGE000000000	SAMEA110698742	uncultured Ventosimonas sp.

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EMG produced TPA metagenomics assembly of PRJNA787435 data set (Geographical resistome profiling in honeybee microbiome reveals resistance gene transfer conferred by mobilizable plasmids).

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