Shewanella (ID 526057) - BioProject

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Accession: PRJNA526057 ID: 526057

Shewanella

Shewanella Genome sequencing and assembly

See Genome Information for Shewanella algae

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29 additional projects are related by organism.

23 additional projects are related by organism.

Comparative genomics of Shewanella algae isolates

Accession	PRJNA526057
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Shewanella[Taxonomy ID: 22] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella
Publications (total 3) Less...	Martín-Rodríguez AJ et al., "Shewanella septentrionalis sp. nov. and Shewanella holmiensis sp. nov., isolated from Baltic Sea water and sediments.", Int J Syst Evol Microbiol, 2023 Apr;73(4) More... Martín-Rodríguez AJ et al., "Shewanella septentrionalis sp. nov. and Shewanella holmiensis sp. nov., isolated from Baltic Sea water and sediments.", Int J Syst Evol Microbiol, 2023 Apr;73(4) Martín-Rodríguez AJ et al., "Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory Pathways in Shewanella algae Strains: Novel Bacterial Sensory Domains and Functional Insights into Lifestyle Regulation.", mSystems, 2022 Apr 26;7(2):e0151821 Tellgren-Roth C et al., "Complete Genome Sequence and Methylome of the Type Strain of Shewanella algae.", Microbiol Resour Announc, 2021 Aug 5;10(31):e0055921 Less...
Submission	Registration date: 18-Oct-2019 Karolinska Institutet

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	90
WGS master	85
Genomic DNA	5
SRA Experiments	1
Protein Sequences	21104
Publications
PubMed	3
PMC	2
Other datasets
BioSample	90
Assembly	90
Supplementary data
Base modification	2

Assembly details:

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Assembly level

Number of Assemblies

5
1
84
90

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_023283745.1	JAKILH000000000		SAMN24537881	KCTC 22492	Parashewanella spongiae
GCA_023284025.1	JAKIKR000000000		SAMN24537865	DSM 17171	Shewanella abyssi
GCA_023283685.1	JAKILK000000000		SAMN24537885	JCM 17801	Shewanella aestuarii
GCA_023283525.1	JAKILW000000000		SAMN24537897	254-1	Shewanella algae
GCA_017570325.1		1	SAMN16670464	150735	Shewanella algae
GCA_017570225.1		1	SAMN16670468	G1	Shewanella algae
GCA_017570125.1		1	SAMN16670438	A59	Shewanella algae
GCA_017570045.1		1	SAMN16670445	A291	Shewanella algae
GCA_017580145.1	JADZGW000000000		SAMN16670442	A93	Shewanella algae
GCA_017580125.1	JADZGX000000000		SAMN16670441	A65	Shewanella algae
GCA_017580105.1	JADZGV000000000		SAMN16670443	A94	Shewanella algae
GCA_017580095.1	JADZGY000000000		SAMN16670439	A60	Shewanella algae
GCA_017580085.1	JADZGU000000000		SAMN16670444	A97	Shewanella algae
GCA_017580205.1	JADZGZ000000000		SAMN16670437	A58	Shewanella algae
GCA_017580185.1	JADZHA000000000		SAMN16670436	A57	Shewanella algae
GCA_017580295.1	JADZHF000000000		SAMN16670475	950570	Shewanella algae
GCA_017580285.1	JADZHE000000000		SAMN16670462	6F5	Shewanella algae
GCA_017580225.1	JADZHC000000000		SAMN16670440	A41	Shewanella algae
GCA_017580235.1	JADZHD000000000		SAMN16670446	A292	Shewanella algae
GCA_017580215.1	JADZHB000000000		SAMN16670435	A56	Shewanella algae
GCA_017580345.1	JADZHI000000000		SAMN16670466	159418	Shewanella algae
GCA_017580335.1	JADZHH000000000		SAMN16670470	590722	Shewanella algae
GCA_017580325.1	JADZHG000000000		SAMN16670469	669801	Shewanella algae
GCA_017580505.1	JADZHP000000000		SAMN16670449	CCUG-48086	Shewanella algae
GCA_017580485.1	JADZHQ000000000		SAMN16670450	CCUG-38646	Shewanella algae
GCA_017580455.1	JADZHN000000000		SAMN16670457	CCUG-56496	Shewanella algae
GCA_017580425.1	JADZHL000000000		SAMN16670447	CCUG-72638	Shewanella algae
GCA_017580415.1	JADZHK000000000		SAMN16670456	CCUG-72678	Shewanella algae
GCA_017580395.1	JADZHJ000000000		SAMN16670465	97087	Shewanella algae
GCA_017580385.1	JADZHM000000000		SAMN16670459	CCUG-58400	Shewanella algae
GCA_017580525.1	JADZHS000000000		SAMN16670451	CCUG-24987	Shewanella algae
GCA_017580535.1	JADZHO000000000		SAMN16670448	CCUG-50501	Shewanella algae
GCA_017580565.1	JADZHR000000000		SAMN16670463	28011	Shewanella algae
GCA_017580665.1	JADZHV000000000		SAMN16670454	CCUG-12945	Shewanella algae
GCA_017580595.1	JADZHT000000000		SAMN16670452	CCUG-20533	Shewanella algae
GCA_017580635.1	JADZHW000000000		SAMN16670467	5043	Shewanella algae
GCA_017580585.1	JADZHU000000000		SAMN16670453	CCUG-15259	Shewanella algae
GCA_017580715.1	JADZHZ000000000		SAMN16670460	404	Shewanella algae
GCA_017580705.1	JADZHX000000000		SAMN16670458	CCUG-789	Shewanella algae
GCA_017580685.1	JADZHY000000000		SAMN16670455	CCUG-526	Shewanella algae
GCA_009183365.2		1	SAMN11083189	CECT-5071	Shewanella algae
GCA_017580065.1	JADZGS000000000		SAMN16670471	HUD-G3	Shewanella algae
GCA_017580025.1	JADZGP000000000		SAMN16670461	SF7	Shewanella algae
GCA_017580015.1	JADZGR000000000		SAMN16670473	HUD-H4	Shewanella algae
GCA_017580005.1	JADZGQ000000000		SAMN16670474	HUD-I2	Shewanella algae
GCA_017579985.1	JADZGT000000000		SAMN16670472	HUD-D8	Shewanella algae
GCA_023283725.1	JAKILJ000000000		SAMN24537883	DSM 23803	Shewanella algicola
GCA_023349185.1	JAKIKY000000000		SAMN24537872	JCM 12193	Shewanella aquimarina
GCA_023283885.1	JAKILA000000000		SAMN24537874	KCTC 22121	Shewanella basaltis
GCA_023284085.1	JAKVHY000000000		SAMN24537884	DSM 8812	Shewanella benthica
GCA_023283475.1	JAKILV000000000		SAMN24537896	CCUG 57101	Shewanella chilikensis
GCA_023283465.1	JAKILX000000000		SAMN24537898	A49	Shewanella chilikensis
GCA_023349125.1	JAKIKT000000000		SAMN24537867	DSM 21332	Shewanella corallii
GCA_023283565.1	JAKILQ000000000		SAMN24537891	CCUG 58667	Shewanella dokdonensis
GCA_023283985.1	JAKIKU000000000		SAMN24537868	DSM 24955	Shewanella electrodiphila
GCA_023349145.1	JAKILP000000000		SAMN24537890	CCUG 57102	Shewanella fodinae
GCA_023284065.1	JAKIKP000000000		SAMN24537863	DSM 16422	Shewanella gaetbuli
GCA_023283645.1	JAKILL000000000		SAMN24537886	KCTC 42663	Shewanella gelidii
GCA_023283945.1	JAKIKW000000000		SAMN24537870	ATCC 700752	Shewanella gelidimarina
GCA_023283485.1	JAKILU000000000		SAMN24537895	LMG 23744	Shewanella glacialipiscicola
GCA_023283585.1	JAKILO000000000		SAMN24537889	KCTC 22180	Shewanella hafniensis
GCA_025370255.1	JAMTCD000000000		SAMN28933879	SP1S2-7	Shewanella holmiensis
GCA_023283595.1	JAKILS000000000		SAMN24537893	KCTC 42807	Shewanella inventionis
GCA_023284045.1	JAKIKQ000000000		SAMN24537864	DSM 17170	Shewanella kaireitica
GCA_023349165.1	JAKILR000000000		SAMN24537892	CCUG 62411	Shewanella litorisediminis
GCA_023283845.1	JAKILC000000000		SAMN24537876	LMG 21403	Shewanella marinintestina
GCA_023283925.1	JAKIKX000000000		SAMN24537871	JCM 12192	Shewanella marisflavi
GCA_023283825.1	JAKILD000000000		SAMN24537877	LMG 21437	Shewanella olleyana
GCA_023283895.1	JAKILB000000000		SAMN24537875	KCTC 23973	Shewanella pneumatophori
GCA_023283765.1	JAKILG000000000		SAMN24537880	DSM 15900	Shewanella profunda
GCA_023283865.1	JAKIKZ000000000		SAMN24537873	JCM 32090	Shewanella psychromarinicola
GCA_023283535.1	JAKILT000000000		SAMN24537894	LMG 21408	Shewanella sairae
GCA_023283695.1	JAKILM000000000		SAMN24537887	KCTC 62131	Shewanella saliphila
GCA_031932065.1	JAUOES000000000		SAMN36536651	SP2S1-2	Shewanella scandinavica
GCA_039024115.1	JBCHKS000000000		SAMN41021390	VAX-SP4-0CM-4	Shewanella scandinavica
GCA_039024095.1	JBCHKR000000000		SAMN41021391	VAX-SP4-0CM-7	Shewanella scandinavica
GCA_023283605.1	JAKILN000000000		SAMN24537888	LMG 21406	Shewanella schlegeliana
GCA_023283775.1	JAKILE000000000		SAMN24537878	CCUG 60900	Shewanella seohaensis
GCA_025370265.1	JAMTCC000000000		SAMN28933880	SP1W3	Shewanella septentrionalis
GCA_031932105.1	JAUOEU000000000		SAMN36536649	SP1S1-7	Shewanella sp. SP1S1-7
GCA_031932075.1	JAUOET000000000		SAMN36536650	SP1S2-4	Shewanella sp. SP1S2-4
GCA_031932025.1	JAUOER000000000		SAMN36536652	SP2S2-4	Shewanella sp. SP2S2-4
GCA_031931965.1	JAUOEQ000000000		SAMN36536653	SP2S2-6	Shewanella sp. SP2S2-6
GCA_023283805.1	JAKILF000000000		SAMN24537879	CCUG 71370	Shewanella submarina
GCA_023284005.1	JAKIKS000000000		SAMN24537866	DSM 17177	Shewanella surugensis
GCA_023283965.1	JAKIKV000000000		SAMN24537869	KCTC 62130	Shewanella ulleungensis
GCA_031932135.1	JAUOEV000000000		SAMN36536648	SP1S1-4	Shewanella vaxholmensis
GCA_039024175.1	JBCHKU000000000		SAMN41021388	VAX-SP0-0CM-1	Shewanella vaxholmensis
GCA_039024155.1	JBCHKT000000000		SAMN41021389	VAX-SP0-4CM-4	Shewanella vaxholmensis
GCA_023283665.1	JAKILI000000000		SAMN24537882	DSM 22215	Shewanella xiamenensis

SRA Data Details

Parameter	Value
Data volume, Gbases	3
Data volume, Mbytes	772

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Shewanella

Shewanella Genome sequencing and assembly

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