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Accession: PRJNA602741 ID: 602741

Contribution of the meat pathway to human nontyphoidal Salmonella diarrhea and bloodstream infections in East Africa

Salmonella Enteritidis and Salmonella Typhimurium are major causes of diarrheal disease and bloodstream infection in East Africa. More...
AccessionPRJNA602741
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsCrump JA et al., "Investigating the Meat Pathway as a Source of Human Nontyphoidal Salmonella Bloodstream Infections and Diarrhea in East Africa.", Clin Infect Dis, 2021 Oct 5;73(7):e1570-e1578
Grants
  • "Zoonoses in Emerging Livestock Systems" (Grant ID BB/L017679/1, UK Biotechnology and Biological Sciences Research Council)
SubmissionRegistration date: 22-Jan-2020
Massey University
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)539
SRA Experiments539
Publications
PubMed1
PMC1
Other datasets
BioSample547
Assembly539
Assembly details:
Assembly levelNumber of Assemblies
310
229
539
AssemblyLevelWGSBioSampleStrainTaxonomy
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HAZEL-068
GCA_019519685.1ContigJAAHQI000000000SAMN13905983
HAZEL-073
GCA_019519655.1ContigJAAHQH000000000SAMN13905984
HAZEL-074
GCA_019519645.1ContigJAAHQJ000000000SAMN13905979
HAZEL-069
GCA_019519615.1ContigJAAHQF000000000SAMN13905986
HAZEL-077
GCA_019519605.1ContigJAAHQG000000000SAMN13905985
HAZEL-076
GCA_019519575.1ContigJAAHQE000000000SAMN13905987
HAZEL-078
GCA_019519565.1ContigJAAHQC000000000SAMN13905989
HAZEL-080
GCA_019519545.1ContigJAAHQD000000000SAMN13905988
HAZEL-079
GCA_019519525.1ContigJAAHQB000000000SAMN13905990
HAZEL-081
GCA_019519505.1ScaffoldJAAHQA000000000SAMN13905991
HAZEL-082
GCA_019519485.1ScaffoldJAAHPZ000000000SAMN13905992
HAZEL-083
GCA_019519465.1ScaffoldJAAHPY000000000SAMN13905993
HAZEL-084
GCA_019519445.1ContigJAAHPX000000000SAMN13905994
HAZEL-085
GCA_019519405.1ContigJAAHPV000000000SAMN13905996
HAZEL-087
GCA_019519415.1ContigJAAHPW000000000SAMN13905995
HAZEL-086
GCA_019519385.1ContigJAAHPU000000000SAMN13905997
HAZEL-088
GCA_019519365.1ContigJAAHPT000000000SAMN13905998
HAZEL-089
GCA_019519345.1ContigJAAHPS000000000SAMN13905999
HAZEL-090
GCA_019519325.1ContigJAAHPQ000000000SAMN13906001
HAZEL-092
GCA_019519295.1ContigJAAHPR000000000SAMN13906000
HAZEL-091
GCA_019519285.1ScaffoldJAAHPN000000000SAMN13906005
HAZEL-096
GCA_019519265.1ContigJAAHPP000000000SAMN13906002
HAZEL-093
GCA_019519245.1ContigJAAHPO000000000SAMN13906004
HAZEL-095
SRA Data Details
ParameterValue
Data volume, Gbases221
Data volume, Tbytes0.13

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