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Accession: PRJNA565199 ID: 565199

Pimephales promelas strain:EPAAWBERC (fathead minnow)

Pimephales promelas strain:EPAAWBERC Genome sequencing and assembly

See Genome Information for Pimephales promelas
Annotated assembly of the Pimephales promelas (fathead minnow) genome. The project goals were to improve genomic assembly completeness, contiguity and gene annotation. More...
AccessionPRJNA565199
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismPimephales promelas[Taxonomy ID: 90988]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales; Pimephales promelas
Publications
  • Martinson JW et al., "De Novo Assembly of the Nearly Complete Fathead Minnow Reference Genome Reveals a Repetitive but Compact Genome.", Environ Toxicol Chem, 2022 Feb;41(2):448-461
  • Liu S et al., "The complete mitochondrial genome of Pimephales promelas (Cypriniformes: Cyprinidae).", Mitochondrial DNA A DNA Mapp Seq Anal, 2016 Sep;27(5):3711-2
SubmissionRegistration date: 24-Jan-2021
US EPA
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)564
WGS master1
SRA Experiments101
Protein Sequences47578
Publications
PubMed2
PMC1
Other datasets
BioSample30
Assembly1
Supplementary data
BioNano map3
SRA Data Details
ParameterValue
Data volume, Gbases584
Data volume, Tbytes0.79
Related RefSeq Project
PRJNA702526 : Pimephales promelas strain:EPAAWBERC RefSeq Genome sequencing and assembly

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