ID 480723 - BioProject

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Accession: PRJNA480723 ID: 480723

Genomic Epidemiology of isolates causing human blood stream infections

See Genome Information for Escherichia coli

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This project is a component of the Genome submissions of the Ausgem initiative

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15 additional projects are components of the Genome submissions of the Ausgem initiative.

9348 additional projects are related by organism.

Surveillance of the possible acquisition routes of drug resistance genes and evolution of extensively drug resistant Gram-negative pathogens collected from blood stream infections being reported at a specific hospital in Sydney over a four-year period.

Accession	PRJNA480723
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Hastak P et al., "Escherichia coli ST8196 is a novel, locally evolved, and extensively drug resistant pathogenic lineage within the ST131 clonal complex.", Emerg Microbes Infect, 2020 Dec;9(1):1780-1792
Submission	Registration date: 13-Sep-2019 Ausgem - University of Technology Sydney
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	14438
WGS master	179
SRA Experiments	82
Protein Sequences	406188
Publications
PubMed	1
PMC	1
Other datasets
BioSample	272
Assembly	179

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

46
133
179

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_008388345.1	RDTG00000000	SAMN10187648	EC87_ST131C	Escherichia coli
GCA_008389365.1	RDVE00000000	SAMN10187590	EC19_ST372C	Escherichia coli
GCA_008389355.1	RDVJ00000000	SAMN10187585	EC173_ST12C	Escherichia coli
GCA_008385695.1	REBI00000000	SAMN10187594	EC223_ST62C	Escherichia coli
GCA_008385675.1	REBJ00000000	SAMN10187573	EC128_ST8197H	Escherichia coli
GCA_008385635.1	REBE00000000	SAMN10187633	EC393_ST131C	Escherichia coli
GCA_008385615.1	REBG00000000	SAMN10187606	EC249a_ST127H	Escherichia coli
GCA_008385585.1	REBC00000000	SAMN10187644	EC7_ST144C	Escherichia coli
GCA_008385575.1	REBD00000000	SAMN10187643	EC68_ST95C	Escherichia coli
GCA_008385535.1	RDVO00000000	SAMN10187580	EC16_ST1193C	Escherichia coli
GCA_008385545.1	RDVN00000000	SAMN10187581	EC160_ST73C	Escherichia coli
GCA_008385515.1	RDWA00000000	SAMN10187567	EC104_ST95C	Escherichia coli
GCA_008385495.1	RDVZ00000000	SAMN10187568	EC108_ST95C	Escherichia coli
GCA_008385475.1	RDVY00000000	SAMN10187569	EC11_ST95C	Escherichia coli
GCA_008385455.1	RDVW00000000	SAMN10187571	EC120_ST131C	Escherichia coli
GCA_008385425.1	RDVV00000000	SAMN10187572	EC123_ST88C	Escherichia coli
GCA_008385395.1	RDVX00000000	SAMN10187570	EC12_ST131H	Escherichia coli
GCA_008385365.1	RDVS00000000	SAMN10187576	EC147_ST73C	Escherichia coli
GCA_008385345.1	RDVU00000000	SAMN10187574	EC131_ST131C	Escherichia coli
GCA_008385315.1	RDVT00000000	SAMN10187575	EC137_ST2003C	Escherichia coli
GCA_008385265.1	RDVP00000000	SAMN10187579	EC152_ST95C	Escherichia coli
GCA_008385275.1	RDVR00000000	SAMN10187577	EC149_ST73C	Escherichia coli
GCA_008385255.1	RDVQ00000000	SAMN10187578	EC15_ST5242C	Escherichia coli
GCA_008385225.1	RDVM00000000	SAMN10187582	EC164_ST73C	Escherichia coli
GCA_008385185.1	RDVK00000000	SAMN10187584	EC169_ST73C	Escherichia coli
GCA_008385175.1	RDVL00000000	SAMN10187583	EC168_ST73C	Escherichia coli
GCA_008385075.1	RDVF00000000	SAMN10187589	EC182_ST73C	Escherichia coli
GCA_008385105.1	RDVI00000000	SAMN10187586	EC177_ST95H	Escherichia coli
GCA_008385085.1	RDVG00000000	SAMN10187588	EC179_ST131C	Escherichia coli
GCA_008385095.1	RDVH00000000	SAMN10187587	EC178_ST69C	Escherichia coli
GCA_008389305.1	RDVB00000000	SAMN10187593	EC222_ST73H	Escherichia coli
GCA_008389275.1	RDVA00000000	SAMN10187595	EC226_ST349C	Escherichia coli
GCA_008389335.1	RDVD00000000	SAMN10187591	EC2_ST95C	Escherichia coli
GCA_008389295.1	RDVC00000000	SAMN10187592	EC20_ST73C	Escherichia coli
GCA_008389255.1	RDUY00000000	SAMN10187598	EC232_ST73C	Escherichia coli
GCA_008389215.1	RDUX00000000	SAMN10187599	EC233_ST8196C	Escherichia coli
GCA_008389235.1	RDUZ00000000	SAMN10187596	EC230_ST91C	Escherichia coli
GCA_008389185.1	RDUW00000000	SAMN10187600	EC234_ST8196C	Escherichia coli
GCA_008389165.1	RDUV00000000	SAMN10187601	EC235_ST117C	Escherichia coli
GCA_008389155.1	RDUT00000000	SAMN10187603	EC239_ST62C	Escherichia coli
GCA_008389135.1	RDUU00000000	SAMN10187602	EC236_ST540C	Escherichia coli
GCA_008389115.1	RDUS00000000	SAMN10187604	EC24_ST73C	Escherichia coli
GCA_008389095.1	RDUR00000000	SAMN10187605	EC247_ST69H	Escherichia coli
GCA_008389075.1	RDUQ00000000	SAMN10187607	EC25_ST88H	Escherichia coli
GCA_008389055.1	RDUP00000000	SAMN10187608	EC250_ST127C	Escherichia coli
GCA_008389015.1	RDUL00000000	SAMN10187612	EC275_ST131C	Escherichia coli
GCA_008389025.1	RDUO00000000	SAMN10187609	EC272_ST73C	Escherichia coli
GCA_008388935.1	RDUK00000000	SAMN10187613	EC276_ST906C	Escherichia coli
GCA_008388975.1	RDUN00000000	SAMN10187610	EC273_ST1434C	Escherichia coli
GCA_008388955.1	RDUJ00000000	SAMN10187614	EC280_ST144C	Escherichia coli
GCA_008388895.1	RDUF00000000	SAMN10187619	EC297_ST131C	Escherichia coli
GCA_008388855.1	RDUG00000000	SAMN10187618	EC290_ST127C	Escherichia coli
GCA_008388905.1	RDUI00000000	SAMN10187615	EC282_ST73C	Escherichia coli
GCA_008388835.1	RDUD00000000	SAMN10187621	EC308_ST131C	Escherichia coli
GCA_008388865.1	RDUH00000000	SAMN10187616	EC285_ST648C	Escherichia coli
GCA_008388815.1	RDUE00000000	SAMN10187620	EC302_ST349	Escherichia coli
GCA_008388795.1	RDUB00000000	SAMN10187623	EC33_ST73C	Escherichia coli
GCA_008388765.1	RDUC00000000	SAMN10187622	EC323_ST549H	Escherichia coli
GCA_008388755.1	RDTZ00000000	SAMN10187625	EC337_ST69H	Escherichia coli
GCA_008388725.1	RDTY00000000	SAMN10187626	EC345_ST10C	Escherichia coli
GCA_008388715.1	RDUA00000000	SAMN10187624	EC330_ST681C	Escherichia coli
GCA_008388695.1	RDTX00000000	SAMN10187627	EC347_ST73C	Escherichia coli
GCA_008388675.1	RDTV00000000	SAMN10187629	EC357_ST131C	Escherichia coli
GCA_008388645.1	RDTU00000000	SAMN10187631	EC372_ST95C	Escherichia coli
GCA_008388635.1	RDTW00000000	SAMN10187628	EC35_ST69C	Escherichia coli
GCA_008388605.1	RDTS00000000	SAMN10187634	EC398_ST4702C	Escherichia coli
GCA_008388595.1	RDTR00000000	SAMN10187635	EC44_ST131H	Escherichia coli
GCA_008388575.1	RDTT00000000	SAMN10187632	EC385_ST73C	Escherichia coli
GCA_008388555.1	RDTP00000000	SAMN10187637	EC46_ST131H	Escherichia coli
GCA_008388535.1	RDTQ00000000	SAMN10187636	EC45_ST57C	Escherichia coli
GCA_008388505.1	RDTL00000000	SAMN10187641	EC65_ST127C	Escherichia coli
GCA_008388495.1	RDTN00000000	SAMN10187639	EC51_ST69C	Escherichia coli
GCA_008388475.1	RDTO00000000	SAMN10187638	EC5_ST73C	Escherichia coli
GCA_008388445.1	RDTJ00000000	SAMN10187645	EC70_ST131H	Escherichia coli
GCA_008388435.1	RDTK00000000	SAMN10187642	EC66_ST393C	Escherichia coli
GCA_008388375.1	RDTI00000000	SAMN10187646	EC8_ST131C	Escherichia coli
GCA_008388415.1	RDTM00000000	SAMN10187640	EC56_ST164C	Escherichia coli
GCA_008388335.1	RDTH00000000	SAMN10187647	EC84_ST131H	Escherichia coli
GCA_016653155.1	WNIN00000000	SAMN13340720	EC36_ST38H	Escherichia coli
GCA_016653125.1	WNIP00000000	SAMN13340722	EC231_ST8196H	Escherichia coli
GCA_016653075.1	WNIO00000000	SAMN13340721	EC274_ST38H	Escherichia coli
GCA_016401355.1	WMLE00000000	SAMN13340762	EC234_ST8196H	Escherichia coli
GCA_020591825.1	JAGDMM000000000	SAMN18309770	EC274_ST38	Escherichia coli
GCA_020591815.1	JAGDML000000000	SAMN18309758	EC36_ST38	Escherichia coli
GCA_008385725.2	REBF00000000	SAMN10187630	EC36_ST38H	Escherichia coli
GCA_008388995.2	RDUM00000000	SAMN10187611	EC274_ST38H	Escherichia coli
GCA_008385645.2	REBH00000000	SAMN10187597	EC231_ST38C	Escherichia coli
GCA_016653045.1	WMOY00000000	SAMN13301601	KO10_C	Klebsiella grimontii
GCA_016653035.1	WMOW00000000	SAMN13301605	KO36_C	Klebsiella michiganensis
GCA_016653015.1	WMOU00000000	SAMN13301611	KO70_H	Klebsiella michiganensis
GCA_016652995.1	WMOX00000000	SAMN13301602	KO12_C	Klebsiella michiganensis
GCA_016652955.1	WMOR00000000	SAMN13301618	KA98_C	Klebsiella michiganensis
GCA_016652965.1	WMOV00000000	SAMN13301610	KO66_H	Klebsiella michiganensis
GCA_016652925.1	WMOT00000000	SAMN13301612	KO99_C	Klebsiella michiganensis
GCA_016652915.1	WMOS00000000	SAMN13301616	KA43_C	Klebsiella michiganensis
GCA_016653085.1	WMOZ00000000	SAMN13301600	KO7_H	Klebsiella michiganensis
GCA_016636165.1	WMOC00000000	SAMN13301604	KO31_C	Klebsiella oxytoca
GCA_016636115.1	WMOA00000000	SAMN13301607	KO41_C	Klebsiella oxytoca
GCA_016636135.1	WMOB00000000	SAMN13301606	KO39_H	Klebsiella oxytoca
GCA_016636105.1	WMOD00000000	SAMN13301603	KO19_H	Klebsiella oxytoca
GCA_016636085.1	WMNX00000000	SAMN13301613	KO104_H	Klebsiella oxytoca
GCA_016636055.1	WMNW00000000	SAMN13301614	KO105_C	Klebsiella oxytoca
GCA_016636045.1	WMNZ00000000	SAMN13301608	KO52_H	Klebsiella oxytoca
GCA_016636025.1	WMNY00000000	SAMN13301609	KO57_H	Klebsiella oxytoca
GCA_016635995.1	WMNU00000000	SAMN13301620	KP5_C	Klebsiella pneumoniae
GCA_016635985.1	WMNV00000000	SAMN13301619	KP2_H	Klebsiella pneumoniae
GCA_016635955.1	WMNR00000000	SAMN13301623	KP9_H	Klebsiella pneumoniae
GCA_016635945.1	WMNS00000000	SAMN13301622	KP8_C	Klebsiella pneumoniae
GCA_016635925.1	WMNQ00000000	SAMN13301625	KP14_C	Klebsiella pneumoniae
GCA_016635905.1	WMNT00000000	SAMN13301621	KP6_C	Klebsiella pneumoniae
GCA_016635885.1	WMNO00000000	SAMN13301629	KP24_C	Klebsiella pneumoniae
GCA_016635835.1	WMNP00000000	SAMN13301628	KP21_C	Klebsiella pneumoniae
GCA_016635825.1	WMNN00000000	SAMN13301631	KP26_H	Klebsiella pneumoniae
GCA_016635805.1	WMNL00000000	SAMN13301635	KP32_H	Klebsiella pneumoniae
GCA_016635775.1	WMNM00000000	SAMN13301633	KP28_C	Klebsiella pneumoniae
GCA_016635675.1	WMNJ00000000	SAMN13301638	KP35_C	Klebsiella pneumoniae
GCA_016635685.1	WMNK00000000	SAMN13301637	KP34_C	Klebsiella pneumoniae
GCA_016635015.1	WMMJ00000000	SAMN13301668	KP90_C	Klebsiella pneumoniae
GCA_016635005.1	WMMI00000000	SAMN13301669	KP91_C	Klebsiella pneumoniae
GCA_016634985.1	WMMH00000000	SAMN13301670	KP92_C	Klebsiella pneumoniae
GCA_016634975.1	WMMG00000000	SAMN13301671	KP93_C	Klebsiella pneumoniae
GCA_016634965.1	WMMF00000000	SAMN13301672	KP94_C	Klebsiella pneumoniae
GCA_016634945.1	WMMD00000000	SAMN13301674	KP96_C	Klebsiella pneumoniae
GCA_016634915.1	WMMC00000000	SAMN13301675	KP97_C	Klebsiella pneumoniae
GCA_016634905.1	WMME00000000	SAMN13301673	KP95_C	Klebsiella pneumoniae
GCA_016634875.1	WMMB00000000	SAMN13301676	KP100_H	Klebsiella pneumoniae
GCA_016634865.1	WMMA00000000	SAMN13301677	KP102_C	Klebsiella pneumoniae
GCA_016634845.1	WMLZ00000000	SAMN13301678	KP106_C	Klebsiella pneumoniae
GCA_016634825.1	WMLY00000000	SAMN13301679	KP108_H	Klebsiella pneumoniae
GCA_016634795.1	WMLX00000000	SAMN13301680	KP109_C	Klebsiella pneumoniae
GCA_016635465.1	WMNB00000000	SAMN13301649	KP53_C	Klebsiella pneumoniae
GCA_016635435.1	WMMZ00000000	SAMN13301651	KP56_C	Klebsiella pneumoniae
GCA_016635425.1	WMMY00000000	SAMN13301652	KP58	Klebsiella pneumoniae
GCA_016635495.1	WMNC00000000	SAMN13301648	KP51_C	Klebsiella pneumoniae
GCA_016635485.1	WMNA00000000	SAMN13301650	KP55_C	Klebsiella pneumoniae
GCA_016635525.1	WMNE00000000	SAMN13301646	KP48_C	Klebsiella pneumoniae
GCA_016635545.1	WMND00000000	SAMN13301647	KP50_C	Klebsiella pneumoniae
GCA_016635565.1	WMNF00000000	SAMN13301645	KP47_C	Klebsiella pneumoniae
GCA_016635735.1	WMNI00000000	SAMN13301639	KP37_C	Klebsiella pneumoniae
GCA_016635585.1	WMNH00000000	SAMN13301642	KP44_C	Klebsiella pneumoniae
GCA_016635605.1	WMNG00000000	SAMN13301644	KP46_C	Klebsiella pneumoniae
GCA_016634635.1	WMLS00000000	SAMN13301691	KP121_H	Klebsiella pneumoniae
GCA_016634565.1	WMLR00000000	SAMN13301696	KP126_C	Klebsiella pneumoniae
GCA_016634545.1	WMLP00000000	SAMN13301698	KP128_C	Klebsiella pneumoniae
GCA_016634525.1	WMLQ00000000	SAMN13301697	KP127_C	Klebsiella pneumoniae
GCA_016634505.1	WMLO00000000	SAMN13301699	KP129_C	Klebsiella pneumoniae
GCA_016634485.1	WMLN00000000	SAMN13301700	KP130_H	Klebsiella pneumoniae
GCA_016634465.1	WMLM00000000	SAMN13301701	KP131_H	Klebsiella pneumoniae
GCA_016635305.1	WMMT00000000	SAMN13301657	KP67_C	Klebsiella pneumoniae
GCA_016635285.1	WMMR00000000	SAMN13301659	KP71_H	Klebsiella pneumoniae
GCA_016635255.1	WMMQ00000000	SAMN13301661	KP73_C	Klebsiella pneumoniae
GCA_016635385.1	WMMW00000000	SAMN13301654	KP60_C	Klebsiella pneumoniae
GCA_016635375.1	WMMX00000000	SAMN13301653	KP59_C	Klebsiella pneumoniae
GCA_016635355.1	WMMV00000000	SAMN13301655	KP61_C	Klebsiella pneumoniae
GCA_016635345.1	WMMU00000000	SAMN13301656	KP64	Klebsiella pneumoniae
GCA_016635325.1	WMMS00000000	SAMN13301658	KP68_C	Klebsiella pneumoniae
GCA_016635215.1	WMMP00000000	SAMN13301662	KP74	Klebsiella pneumoniae
GCA_016635195.1	WMMN00000000	SAMN13301664	KP76_C	Klebsiella pneumoniae
GCA_016635185.1	WMMO00000000	SAMN13301663	KP75_C	Klebsiella pneumoniae
GCA_016635165.1	WMMM00000000	SAMN13301665	KP87_H	Klebsiella pneumoniae
GCA_016635135.1	WMML00000000	SAMN13301666	KP88_C	Klebsiella pneumoniae
GCA_016635125.1	WMMK00000000	SAMN13301667	KP89_C	Klebsiella pneumoniae
GCA_016634745.1	WMLV00000000	SAMN13301685	KP114_C	Klebsiella pneumoniae
GCA_016634735.1	WMLU00000000	SAMN13301686	KP115_C	Klebsiella pneumoniae
GCA_016634725.1	WMOE00000000	SAMN13301687	KP116_C	Klebsiella pneumoniae
GCA_016634705.1	WMLW00000000	SAMN13301681	KP110_H	Klebsiella pneumoniae
GCA_016634675.1	WMLT00000000	SAMN13301690	KP120_C	Klebsiella pneumoniae
GCA_016634625.1	WMOH00000000	SAMN13301693	KP123_H	Klebsiella quasipneumoniae
GCA_016634585.1	WMOF00000000	SAMN13301695	KP125_C	Klebsiella quasipneumoniae
GCA_016635765.1	WMOP00000000	SAMN13301634	KP29_C	Klebsiella quasipneumoniae
GCA_016635865.1	WMOQ00000000	SAMN13301630	KP25_C	Klebsiella quasipneumoniae
GCA_016635665.1	WMON00000000	SAMN13301640	KP38_C	Klebsiella variicola
GCA_016635615.1	WMOM00000000	SAMN13301641	KP42_C	Klebsiella variicola
GCA_016635595.1	WMOL00000000	SAMN13301643	KP45_C	Klebsiella variicola
GCA_016635725.1	WMOO00000000	SAMN13301636	KP33_H	Klebsiella variicola
GCA_016634785.1	WMOJ00000000	SAMN13301684	KP113_C	Klebsiella variicola
GCA_016634605.1	WMOG00000000	SAMN13301694	KP124_C	Klebsiella variicola
GCA_016634665.1	WMOI00000000	SAMN13301688	KP117_H	Klebsiella variicola
GCA_016635235.1	WMOK00000000	SAMN13301660	KP72_C	Klebsiella variicola

SRA Data Details

Parameter	Value
Data volume, Gbases	18
Data volume, Mbytes	6550

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Genomic Epidemiology of isolates causing human blood stream infections

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