Warning: The NCBI web site requires JavaScript to function. more...

BioProject

Organizing biological data

Result Filters

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Links from Nucleotide

Accession: PRJNA261711 ID: 261711

Campylobacterales

Genome sequencing of Helicobacter and Campylobacter species isolated from rodents

Genome sequences of unnamed and named Helicobacter and Campylobacter species sequenced at MIT. More...

Accession	PRJNA261711
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Campylobacterales[Taxonomy ID: 213849] Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales
Publications	Shen Z et al., "Helicobacter saguini, a Novel Helicobacter Isolated from Cotton-Top Tamarins with Ulcerative Colitis, Has Proinflammatory Properties and Induces Typhlocolitis and Dysplasia in Gnotobiotic IL-10-/- Mice.", Infect Immun, 2016 Aug;84(8):2307-2316 Sheh A et al., "Draft genome sequences of eight enterohepatic helicobacter species isolated from both laboratory and wild rodents.", Genome Announc, 2014 Nov 26;2(6)
Grants	"ANIMAL MODELS FACILITIES CORE" (Grant ID P30ES002109, National Institutes of Health) "HELICOBACTER INDUCED HEPATITIS AND TUMORIGENESIS" (Grant ID R01CA067529, National Institutes of Health) "DIAGNOSIS AND PATHOBIOLOGY OF EMERGING ENTEROHEPATIC HELICOBACTER SPP. IN MICE" (Grant ID R01OD011141, National Institutes of Health)
Submission	Registration date: 2-Oct-2014 Massachusetts Institute of Technology
Relevance	Animal models of Research

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1787
WGS master	19
SRA Experiments	18
Protein Sequences	37690
Publications
PubMed	2
PMC	2
Other datasets
BioSample	19
Assembly	19

Assembly details:

Assembly level

Number of Assemblies

Scaffold

Contig

1
18
19

Assembly	Level	WGS	BioSample	Strain	Taxonomy
GCA_000762855.1		JRMR00000000	SAMN03075554	MIT 97-5078	Campylobacter sp. MIT 97-5078
GCA_000765745.2		JRPC00000000	SAMN03075562	MIT-03-7007	Helicobacter apodemus
GCA_000765785.2		JRPG00000000	SAMN03075566	ATCC 51630	Helicobacter bilis
GCA_000765925.2		JRPJ00000000	SAMN03075569	ATCC 49320	Helicobacter bilis
GCA_000765865.2		JRPI00000000	SAMN03075568	ATCC 49314	Helicobacter bilis
GCA_000765845.2		JRPH00000000	SAMN03075567	Missouri	Helicobacter bilis
GCA_000763135.2		JRPR00000000	SAMN03075561	MIT 09-6949	Helicobacter jaachi
GCA_000762845.2		JRMQ00000000	SAMN03074667	MIT 01-6451	Helicobacter japonicus
GCA_000765825.2		JRPE00000000	SAMN03075564	MIT 96-1001	Helicobacter magdeburgensis
GCA_000765805.2		JRPD00000000	SAMN03075563	ST1	Helicobacter muridarum
GCA_000762875.2		JRMP00000000	SAMN03074666	MIT 97-6194	Helicobacter saguini
GCA_000762925.2		JRMS00000000	SAMN03075556	MIT 03-1614	Helicobacter sp. MIT 03-1614
GCA_000765685.2		JROY00000000	SAMN03075557	MIT 03-1616	Helicobacter sp. MIT 03-1616
GCA_000765665.2		JROZ00000000	SAMN03075558	MIT 05-5293	Helicobacter sp. MIT 05-5293
GCA_000765675.2		JRPA00000000	SAMN03075559	MIT 05-5294	Helicobacter sp. MIT 05-5294
GCA_000765695.2		JRPB00000000	SAMN03075560	MIT 11-5569	Helicobacter sp. MIT 11-5569
GCA_000765885.2		JRPK00000000	SAMN03075570	ATCC 49310	Helicobacter trogontum
GCA_000765905.2		JRPL00000000	SAMN03075571	ATCC 700114	Helicobacter trogontum
GCA_000765765.2		JRPF00000000	SAMN03075565	MIT 98-6810	Helicobacter typhlonius

SRA Data Details

Parameter	Value
Data volume, Gbases	5
Data volume, Mbytes	2606

Supplemental Content

Related information

Assembly
All related Assemblies
BioSample
All related BioSamples
Full text in PMC
PMC links
Genome
Related Genomes
Nucleotide
Related Nucleotide entry
Protein
Related Proteins
PubMed
PubMed Links
Related Genes
Genes related to a genome project
SRA
All related SRA Experiments
Taxonomy
Taxonomy Links
WGS master
Link to WGS master record(s)

LinkOut to external resources

GOLD: 19 Sequencing Projects [Genomes On Line Database]
GOLD: 19 Sequencing Projects
Genomes On Line Database
2657245476: Helicobacter trogontum ATCC 49310 [Integrated Microbial Genomes]
2657245476: Helicobacter trogontum ATCC 49310
Integrated Microbial Genomes
2791355303: Helicobacter japonicus MIT 01-6451 [Integrated Microbial Genomes]
2791355303: Helicobacter japonicus MIT 01-6451
Integrated Microbial Genomes
2700989478: Helicobacter sp. MIT 03-1614 [Integrated Microbial Genomes]
2700989478: Helicobacter sp. MIT 03-1614
Integrated Microbial Genomes
SILVA LSU Database [SILVA]
SILVA LSU Database
SILVA
SILVA SSU Database [SILVA]
SILVA SSU Database
SILVA

Recent activity

Clear Turn Off Turn On

Campylobacterales
Campylobacterales
Genome sequencing of Helicobacter and Campylobacter species isolated from rodents

BioProject
BioProject Links for Nucleotide (Select 1658932269) (1)
BioProject

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

You are here: NCBI