Escherichia coli (ID 448751) - BioProject

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Accession: PRJNA448751 ID: 448751

Escherichia coli

Escherichia coli Genome sequencing and assembly

See Genome Information for Escherichia coli

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9369 additional projects are related by organism.

Escherichia coli Genome sequencing and assembly. The goal was to perform phylogenomic analysis and characterization of isolates according to serotype, serogroup and virulence factor repertoires.

Accession	PRJNA448751
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications	Montero DA et al., "Cumulative acquisition of pathogenicity islands has shaped virulence potential and contributed to the emergence of LEE-negative Shiga toxin-producing Escherichia coli strains.", Emerg Microbes Infect, 2019;8(1):486-502
Grants	"Characterization of new genetic markers encoded within an undescribed Locus of Adherence and Autoaggregation (LAA) present in emerging clinically relevant Shiga toxin-producing E. coli strains" (Grant ID 1161161, Fondo Nacional de Desarrollo Cientifico y Tecnologico)
Submission	Registration date: 5-Apr-2019 Universidad de Chile
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	5114
WGS master	35
Protein Sequences	178019
Publications
PubMed	1
PMC	1
Other datasets
BioSample	35
Assembly	35

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

35
35

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_004661635.1	QERP00000000	SAMN09011738	208_3	Escherichia coli
GCA_004661645.1	QERT00000000	SAMN09011734	E043	Escherichia coli
GCA_004661595.1	QERN00000000	SAMN09011740	175_1	Escherichia coli
GCA_004664665.1	QESQ00000000	SAMN09011711	365-1	Escherichia coli
GCA_004664645.1	QESP00000000	SAMN09011712	CM15-2	Escherichia coli
GCA_004661695.1	QERV00000000	SAMN09011732	VTB-412/MF347i	Escherichia coli
GCA_004661625.1	QERR00000000	SAMN09011736	AP32-1	Escherichia coli
GCA_004661535.1	QERL00000000	SAMN09011742	115_4	Escherichia coli
GCA_004661615.1	QERO00000000	SAMN09011739	AP31-1	Escherichia coli
GCA_004661545.1	QERM00000000	SAMN09011741	218_8	Escherichia coli
GCA_004661505.1	QERK00000000	SAMN09011743	58_3	Escherichia coli
GCA_004661515.1	QERQ00000000	SAMN09011737	6_6	Escherichia coli
GCA_004661495.1	QERJ00000000	SAMN09011744	180-3-4r	Escherichia coli
GCA_004664615.1	QESO00000000	SAMN09011713	30M	Escherichia coli
GCA_004664605.1	QESN00000000	SAMN09011714	45-2-4	Escherichia coli
GCA_004664585.1	QESM00000000	SAMN09011715	116-1	Escherichia coli
GCA_004664565.1	QESK00000000	SAMN09011717	HW1-3	Escherichia coli
GCA_004664535.1	QESL00000000	SAMN09011716	HT1-6	Escherichia coli
GCA_004664495.1	QESH00000000	SAMN09011720	V07-4-4	Escherichia coli
GCA_004664525.1	QESJ00000000	SAMN09011718	AM162-1	Escherichia coli
GCA_004664515.1	QESI00000000	SAMN09011719	348_3	Escherichia coli
GCA_004664435.1	QESF00000000	SAMN09011722	47-1-1	Escherichia coli
GCA_004664415.1	QESD00000000	SAMN09011724	5-1-1	Escherichia coli
GCA_004664455.1	QESG00000000	SAMN09011721	AP16-1	Escherichia coli
GCA_004664425.1	QESE00000000	SAMN09011723	FO130	Escherichia coli
GCA_004664385.1	QESC00000000	SAMN09011725	211_1	Escherichia coli
GCA_004664345.1	QESA00000000	SAMN09011727	VTO-16	Escherichia coli
GCA_004664355.1	QESB00000000	SAMN09011726	VTB-288	Escherichia coli
GCA_004664325.1	QERZ00000000	SAMN09011728	E044-00	Escherichia coli
GCA_004664315.1	QERX00000000	SAMN09011730	IH39595/07C	Escherichia coli
GCA_004664245.1	QESR00000000	SAMN09011710	26-1	Escherichia coli
GCA_004664235.1	QERS00000000	SAMN09011735	E046	Escherichia coli
GCA_004664265.1	QERW00000000	SAMN09011731	IH9913/07A	Escherichia coli
GCA_004664255.1	QERU00000000	SAMN09011733	E042	Escherichia coli
GCA_004664225.1	QERY00000000	SAMN09011729	E045-00	Escherichia coli

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Escherichia coli Genome sequencing and assembly

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