Enterobacteriaceae (ID 495945) - BioProject

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Accession: PRJDB7521 ID: 495945

Enterobacteriaceae

Whole genome sequencing of carbapenem-resistant Enterobacterales isolated in Japan

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This project is a component of the AMED CRE Consortium: Carbapenem-resistant Enterobacteriaceae in Asia

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12 additional projects are components of the AMED CRE Consortium: Carbapenem-resistant Enterobacteriaceae in Asia.

The purpose of this project is to investigate the prevalence of carbapenem-resistant Enterobacterales in Asian countries. Special emphasis is laid on plasmids harboring carbapenemase genes responsible for the resistance.

Accession	PRJDB7521
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Enterobacteriaceae[Taxonomy ID: 543] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae
Publications	Tetsuka N et al., "Molecular epidemiological analysis and risk factors for acquisition of carbapenemase-producing Enterobacter cloacae complex in a Japanese university hospital.", Antimicrob Resist Infect Control, 2019;8:126
Grants	"Japan Initiative for Global Research Network on Infectious Diseases (J-GRID)" (Grant ID N/A, Japan Agency for Medical Research and Development) "Research Program on Emerging and Re-emerging Infectious Diseases" (Grant ID N/A, Japan Agency for Medical Research and Development)
Submission	Registration date: 29-Dec-2018 National Institute of Infectious Diseases
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1285
WGS master	7
Genomic DNA	11
Protein Sequences	5510
Publications
PubMed	1
PMC	1
Other datasets
BioSample	8
Assembly	8

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

1
7
8

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_004011375.2	BIGA00000000	1	SAMD00143518	NUH13_ECL030	Enterobacter asburiae
GCA_004011475.2	BIGF00000000	1	SAMD00143520	NUH15_ECL035	Enterobacter asburiae
GCA_004011455.2	BIGE00000000	1	SAMD00143519	NUH15_ECL032	Enterobacter asburiae
GCA_004011435.2	BIGD00000000	1	SAMD00143516	NUH15_ECL020	Enterobacter cloacae
GCA_004011415.2	BIGC00000000	1	SAMD00143515	NUH15_ECL011	Enterobacter cloacae
GCA_004011395.2	BIGB00000000	1	SAMD00143517	NUH14_ECL028	Enterobacter cloacae subsp. cloacae
GCA_004011355.2	BIFZ00000000	1	SAMD00143514	NUH12_ECL006	Enterobacter cloacae
GCA_013426775.1		4	SAMD00235346	KAM260	Klebsiella pneumoniae

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Enterobacteriaceae

Whole genome sequencing of carbapenem-resistant Enterobacterales isolated in Japan

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