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Accession: PRJNA508509 ID: 508509

Whole Genome Sequencing of Carbapenem-resistant Gram-negative clinical isolates from Egypt

Illumina sequencing of clinical isolates from Egypt
AccessionPRJNA508509
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 5-Dec-2018
JCVI
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)6323
WGS master55
SRA Experiments24
Protein Sequences284769
Other datasets
BioSample55
Assembly55
Assembly details:
Assembly levelNumber of Assemblies
Contig Contig
Total
55
55
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_003977465.1ContigRYXI00000000SAMN10527296
GCID_CRE_0021
Bacillus safensis
GCA_003977165.1ContigRYXN00000000SAMN10527291
GCID_CRE_0015
Enterobacter hormaechei subsp. xiangfangensis
GCA_003977395.1ContigRYXG00000000SAMN10527298
GCID_CRE_0033
Escherichia coli
GCA_003977575.1ContigRYXW00000000SAMN10527282
GCID_CRE_0002
Escherichia coli
GCA_003977565.1ContigRYXV00000000SAMN10527283
GCID_CRE_0004
Escherichia coli
GCA_004803105.1ContigSSUS00000000SAMN11388474
66
Escherichia coli K-12
GCA_004803125.1ContigSSUR00000000SAMN11388473
65
Escherichia coli K-12
GCA_004803295.1ContigSSUV00000000SAMN11388477
69
Escherichia coli K-12
GCA_004803195.1ContigSSUU00000000SAMN11388476
68
Escherichia coli K-12
GCA_004803215.1ContigSSUT00000000SAMN11388475
67
Escherichia coli
GCA_004803305.1ContigSSTT00000000SAMN11388480
72
Escherichia coli K-12
GCA_004803005.1ContigSSTS00000000SAMN11388479
71
Escherichia coli K-12
GCA_004802935.1ContigSSTU00000000SAMN11388481
73
Escherichia coli K-12
GCA_004919995.1ContigSSUW00000000SAMN11388478
70
Escherichia coli K-12
GCA_004803095.1ContigSSUG00000000SAMN11388462
51
Klebsiella pneumoniae subsp. pneumoniae
GCA_004803085.1ContigSSUO00000000SAMN11388470
62
Klebsiella pneumoniae
GCA_004802965.1ContigSSTZ00000000SAMN11388486
78
Klebsiella pneumoniae
GCA_004803075.1ContigSSTW00000000SAMN11388483
75
Klebsiella pneumoniae
GCA_004803395.1ContigSSUN00000000SAMN11388469
61
Klebsiella pneumoniae subsp. pneumoniae
GCA_004803315.1ContigSSUI00000000SAMN11388464
53
Klebsiella pneumoniae subsp. pneumoniae
GCA_004803335.1ContigSSUQ00000000SAMN11388472
64
Klebsiella pneumoniae subsp. pneumoniae
GCA_004803035.1ContigSSUH00000000SAMN11388463
52
Klebsiella pneumoniae subsp. pneumoniae
GCA_004802995.1ContigSSUC00000000SAMN11388458
47
Klebsiella pneumoniae subsp. pneumoniae
GCA_004802925.1ContigSSTV00000000SAMN11388482
74
Klebsiella pneumoniae subsp. pneumoniae
GCA_004802955.1ContigSSUF00000000SAMN11388461
50
Klebsiella pneumoniae subsp. pneumoniae
GCA_004802905.1ContigSSUD00000000SAMN11388459
48
Klebsiella pneumoniae subsp. pneumoniae
GCA_004802835.1ContigSSUB00000000SAMN11388457
46
Klebsiella pneumoniae subsp. pneumoniae
GCA_004802845.1ContigSSTY00000000SAMN11388485
77
Klebsiella pneumoniae subsp. pneumoniae
GCA_004802855.1ContigSSUK00000000SAMN11388466
56
Klebsiella pneumoniae subsp. pneumoniae
GCA_004802815.1ContigSSUL00000000SAMN11388467
59
Klebsiella pneumoniae subsp. pneumoniae
GCA_004802825.1ContigSSUA00000000SAMN11388487
79
Klebsiella pneumoniae subsp. pneumoniae
GCA_004803235.1ContigSSUP00000000SAMN11388471
63
Klebsiella pneumoniae subsp. pneumoniae
GCA_004803225.1ContigSSUJ00000000SAMN11388465
55
Klebsiella pneumoniae subsp. pneumoniae
GCA_004803185.1ContigSSUE00000000SAMN11388460
49
Klebsiella pneumoniae subsp. pneumoniae
GCA_004803145.1ContigSSTX00000000SAMN11388484
76
Klebsiella pneumoniae subsp. pneumoniae
GCA_004803325.1ContigSSUM00000000SAMN11388468
60
Klebsiella pneumoniae subsp. pneumoniae
GCA_003977505.1ContigRYXP00000000SAMN10527289
GCID_CRE_0012
Klebsiella pneumoniae subsp. pneumoniae
GCA_003977205.1ContigRYXS00000000SAMN10527286
GCID_CRE_0008
Klebsiella pneumoniae subsp. pneumoniae
GCA_003977495.1ContigRYXK00000000SAMN10527294
GCID_CRE_0018
Klebsiella pneumoniae subsp. pneumoniae
GCA_003977175.1ContigRYXR00000000SAMN10527287
GCID_CRE_0009
Klebsiella pneumoniae subsp. pneumoniae
GCA_003977135.1ContigRYXO00000000SAMN10527290
GCID_CRE_0013
Klebsiella pneumoniae subsp. pneumoniae
GCA_003977125.1ContigRYXL00000000SAMN10527293
GCID_CRE_0017
Klebsiella pneumoniae subsp. pneumoniae
GCA_003977085.1ContigRYXJ00000000SAMN10527295
GCID_CRE_0019
Klebsiella pneumoniae subsp. pneumoniae
GCA_003977485.1ContigRYXM00000000SAMN10527292
GCID_CRE_0016
Proteus mirabilis
GCA_003977535.1ContigRYXU00000000SAMN10527284
GCID_CRE_0006
Pseudomonas aeruginosa
GCA_003977345.1ContigRYXC00000000SAMN10527302
GCID_CRE_0038
Shigella boydii
GCA_003977305.1ContigRYXB00000000SAMN10527303
GCID_CRE_0041
Shigella sonnei
GCA_003977275.1ContigRYWZ00000000SAMN10527305
GCID_CRE_0044
Shigella sonnei
GCA_003977415.1ContigRYXH00000000SAMN10527297
GCID_CRE_0030
Shigella sonnei
GCA_003977375.1ContigRYXF00000000SAMN10527299
GCID_CRE_0035
Shigella sonnei
GCA_003977365.1ContigRYXD00000000SAMN10527301
GCID_CRE_0037
Shigella sonnei
GCA_003977285.1ContigRYXA00000000SAMN10527304
GCID_CRE_0043
Shigella sonnei
GCA_003977185.1ContigRYXQ00000000SAMN10527288
GCID_CRE_0011
Shigella sonnei
GCA_003977245.1ContigRYXT00000000SAMN10527285
GCID_CRE_0007
Shigella sonnei
GCA_003977405.1ContigRYXE00000000SAMN10527300
GCID_CRE_0036
Shigella sonnei
SRA Data Details
ParameterValue
Data volume, Gbases23
Data volume, Mbytes9771

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