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Accession: PRJEB21464 ID: 401553

Ausgem Porcine and Human E. coli

Ausgem represents a strategic alliance and collaborative partnership between the New South Wales Department of Primary Industries’ Elizabeth Macarthur Agricultural Institute (EMAI) and the ithree institute at the University of Technology Sydney (UTS) to provide a unique set of translational skills, knowledge and facilities enabling high throughput sequence analysis of a range of pathogen genomes leading to an improved understanding of the disease process and innovative ways to mitigate the risks associated with a range of infectious diseases. More...
AccessionPRJEB21464
Data TypeGenome sequencing and assembly
ScopeMonoisolate
SubmissionRegistration date: 6-Sep-2017
Ausgem
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)34683
WGS master159
Genomic DNA4
SRA Experiments36
Protein Sequences5022
Other datasets
BioSample179
Assembly159
Assembly details:
Assembly levelNumber of Assemblies
1
96
62
159
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_900196715.1ContigFZKD00000000
SAMEA104140585
-
GCA_900196705.1ContigFZKE00000000
SAMEA104140584
-
GCA_900196695.1ContigFZKB00000000
SAMEA104140581
-
GCA_900196685.1ContigFZJW00000000
SAMEA104140572
-
GCA_900196675.1ScaffoldFZJT00000000
SAMEA104140583
-
GCA_900196665.1ContigFZKC00000000
SAMEA104140582
-
GCA_900196655.1ContigFZJZ00000000
SAMEA104140579
-
GCA_900196635.1ContigFZJY00000000
SAMEA104140577
-
GCA_900196645.1ScaffoldFZJX00000000
SAMEA104140561
-
GCA_900196625.1ContigFZJR00000000
SAMEA104140578
-
GCA_900196615.1ContigFZJQ00000000
SAMEA104140580
-
GCA_900196605.1ScaffoldFZKA00000000
SAMEA104140563
-
GCA_900196585.1ContigFZJG00000000
SAMEA104140574
-
GCA_900196575.1ContigFZJF00000000
SAMEA104140575
-
GCA_900196595.1ContigFZJS00000000
SAMEA104140569
-
GCA_900196565.1ContigFZJP00000000
SAMEA104140576
-
GCA_900196555.1ScaffoldFZJD00000000
SAMEA104140562
-
GCA_900196545.1ScaffoldFZJU00000000
SAMEA104140553
-
GCA_900196525.1ScaffoldFZJI00000000
SAMEA104140554
-
GCA_900196515.1ScaffoldFZJN00000000
SAMEA104140570
-
GCA_900196495.1ScaffoldFZJK00000000
SAMEA104140559
-
GCA_900196505.1ScaffoldFZJL00000000
SAMEA104140567
-
GCA_900196475.1ContigFZJE00000000
SAMEA104140573
-
GCA_900196485.1ScaffoldFZJA00000000
SAMEA104140571
-
GCA_900196465.1ScaffoldFZJM00000000
SAMEA104140558
-
GCA_900196455.1ScaffoldFZJC00000000
SAMEA104140551
-
GCA_900196435.1ScaffoldFZIZ00000000
SAMEA104140568
-
GCA_900196445.1ScaffoldFZJV00000000
SAMEA104140547
-
GCA_900196415.1ScaffoldFZIV00000000
SAMEA104140566
-
GCA_900196395.1ScaffoldFZIU00000000
SAMEA104140556
-
GCA_900196405.1ScaffoldFZIR00000000
SAMEA104140565
-
GCA_900196425.1ScaffoldFZIT00000000
SAMEA104140555
-
GCA_900196385.1ScaffoldFZIX00000000
SAMEA104140550
-
GCA_900196375.1ContigFZJJ00000000
SAMEA104140552
-
GCA_900196365.1ScaffoldFZIQ00000000
SAMEA104140549
-
GCA_900196355.1ScaffoldFZJH00000000
SAMEA104140557
-
GCA_900196345.1ScaffoldFZIY00000000
SAMEA104140564
-
GCA_900196335.1ScaffoldFZIW00000000
SAMEA104140546
-
GCA_900196325.1ScaffoldFZJB00000000
SAMEA104140545
-
GCA_900196315.1ScaffoldFZIS00000000
SAMEA104140544
-
GCA_900195795.1ScaffoldFZGP00000000
SAMEA104140493
-
GCA_900195805.1ScaffoldFZGY00000000
SAMEA104140497
-
GCA_900195785.1ScaffoldFZGT00000000
SAMEA104140494
-
GCA_900195775.1ScaffoldFZGV00000000
SAMEA104140491
-
GCA_900195815.1ScaffoldFZGM00000000
SAMEA104140496
-
GCA_900195835.1ScaffoldFZGS00000000
SAMEA104140500
-
GCA_900195825.1ScaffoldFZGL00000000
SAMEA104140495
-
GCA_900195865.1ScaffoldFZGQ00000000
SAMEA104140502
-
GCA_900195845.1ScaffoldFZHE00000000
SAMEA104140505
-
GCA_900195765.1ContigFZGW00000000
SAMEA104140456
-
GCA_900195755.1ScaffoldFZGO00000000
SAMEA104140454
-
GCA_900195745.1ScaffoldFZGN00000000
SAMEA104140490
-
GCA_900195735.1ContigFZFX00000000
SAMEA104140484
-
GCA_900195725.1ContigFZEZ00000000
SAMEA104140461
-
GCA_900195715.1ContigFZFO00000000
SAMEA104140471
-
GCA_900195705.1ContigFZFG00000000
SAMEA104140476
-
GCA_900195685.1ScaffoldFZGI00000000
SAMEA104140466
-
GCA_900195695.1ContigFZFP00000000
SAMEA104140485
-
GCA_900195675.1ContigFZFL00000000
SAMEA104140449
-
GCA_900195665.1ContigFZFK00000000
SAMEA104140483
-
GCA_900195655.1ContigFZGG00000000
SAMEA104140477
-
GCA_900195645.1ContigFZGC00000000
SAMEA104140475
-
GCA_900195625.1ContigFZFF00000000
SAMEA104140481
-
GCA_900195615.1ScaffoldFZET00000000
SAMEA104140446
-
GCA_900195605.1ContigFZGE00000000
SAMEA104140473
-
GCA_900195635.1ScaffoldFZFA00000000
SAMEA104140486
-
GCA_900195585.1ContigFZEU00000000
SAMEA104140444
-
GCA_900195595.1ContigFZFC00000000
SAMEA104140465
-
GCA_900195565.1ContigFZEY00000000
SAMEA104140447
-
GCA_900195515.1ContigFZEV00000000
SAMEA104140443
-
GCA_900195535.1ScaffoldFZFI00000000
SAMEA104140469
-
GCA_900195555.1ScaffoldFZFT00000000
SAMEA104140445
-
GCA_900195575.1ScaffoldFZGF00000000
SAMEA104140479
-
GCA_900195545.1ContigFZFB00000000
SAMEA104140462
-
GCA_900195525.1ContigFZFW00000000
SAMEA104140474
-
GCA_900195505.1ContigFZFV00000000
SAMEA104140451
-
GCA_900195495.1ContigFZGD00000000
SAMEA104140478
-
GCA_900195485.1ScaffoldFZGA00000000
SAMEA104140452
-
GCA_900195435.1ContigFZGH00000000
SAMEA104140459
-
GCA_900195445.1ScaffoldFZFM00000000
SAMEA104140489
-
GCA_900195465.1ContigFZGB00000000
SAMEA104140482
-
GCA_900195455.1ContigFZFQ00000000
SAMEA104140470
-
GCA_900195475.1ScaffoldFZEW00000000
SAMEA104140487
-
GCA_900195365.1ContigFZFN00000000
SAMEA104140463
-
GCA_900195425.1ContigFZFS00000000
SAMEA104140468
-
GCA_900195345.1ContigFZEX00000000
SAMEA104140457
-
GCA_900195415.1ContigFZFD00000000
SAMEA104140458
-
GCA_900195385.1ContigFZFH00000000
SAMEA104140464
-
GCA_900195405.1ScaffoldFZFU00000000
SAMEA104140450
-
GCA_900195395.1ScaffoldFZGJ00000000
SAMEA104140453
-
GCA_900195355.1ScaffoldFZFE00000000
SAMEA104140480
-
GCA_900195375.1ContigFZFJ00000000
SAMEA104140467
-
GCA_900195335.1ContigFZFR00000000
SAMEA104140472
-
GCA_900195325.1ContigFZFZ00000000
SAMEA104140460
-
GCA_900195305.1ContigFZFY00000000
SAMEA104140448
-
GCA_900195315.1ScaffoldFZGK00000000
SAMEA104140488
-
GCA_900195885.1ScaffoldFZGR00000000
SAMEA104140510
-
GCA_900195895.1ScaffoldFZGX00000000
SAMEA104140509
-
GCA_900195855.1ScaffoldFZHA00000000
SAMEA104140492
-
GCA_900195875.1ScaffoldFZGU00000000
SAMEA104140511
-
GCA_900199255.1ScaffoldFZQC00000000
SAMEA104140548
-
GCA_900196305.1ScaffoldFZIN00000000
SAMEA104140543
-
GCA_900196295.1ScaffoldFZIK00000000
SAMEA104140536
-
GCA_900196285.1ScaffoldFZIP00000000
SAMEA104140539
-
GCA_900196275.1ScaffoldFZIO00000000
SAMEA104140541
-
GCA_900196265.1ScaffoldFZIJ00000000
SAMEA104140542
-
GCA_900196255.1ScaffoldFZIL00000000
SAMEA104140537
-
GCA_900196245.1ScaffoldFZIM00000000
SAMEA104140538
-
GCA_900196235.1ScaffoldFZII00000000
SAMEA104140540
-
GCA_900196225.1ContigFZIH00000000
SAMEA104140535
-
GCA_900196215.1ScaffoldFZIE00000000
SAMEA104140515
-
GCA_900196205.1ScaffoldFZID00000000
SAMEA104140532
-
GCA_900196195.1ScaffoldFZHZ00000000
SAMEA104140530
-
GCA_900196185.1ScaffoldFZIB00000000
SAMEA104140521
-
GCA_900196165.1ScaffoldFZHU00000000
SAMEA104140526
-
GCA_900196175.1ScaffoldFZIC00000000
SAMEA104140531
-
GCA_900196155.1ScaffoldFZHW00000000
SAMEA104140525
-
GCA_900196145.1ScaffoldFZIF00000000
SAMEA104140533
-
GCA_900196135.1ScaffoldFZHX00000000
SAMEA104140528
-
GCA_900196125.1ScaffoldFZIG00000000
SAMEA104140527
-
GCA_900196105.1ScaffoldFZHV00000000
SAMEA104140534
-
GCA_900196095.1ScaffoldFZHQ00000000
SAMEA104140522
-
GCA_900196115.1ScaffoldFZHR00000000
SAMEA104140529
-
GCA_900196085.1ScaffoldFZHT00000000
SAMEA104140520
-
GCA_900196075.1ContigFZHP00000000
SAMEA104140523
-
GCA_900196065.1ScaffoldFZHO00000000
SAMEA104140516
-
GCA_900196055.1ScaffoldFZHS00000000
SAMEA104140524
-
GCA_900196045.1ScaffoldFZHM00000000
SAMEA104140519
-
GCA_900196035.1ScaffoldFZHY00000000
SAMEA104140517
-
GCA_900196015.1ScaffoldFZHH00000000
SAMEA104140501
-
GCA_900196025.1ContigFZHJ00000000
SAMEA104140455
-
GCA_900196005.1ScaffoldFZHL00000000
SAMEA104140499
-
GCA_900195995.1ScaffoldFZIA00000000
SAMEA104140514
-
GCA_900195985.1ScaffoldFZHI00000000
SAMEA104140518
-
GCA_900195975.1ContigFZHF00000000
SAMEA104140508
-
GCA_900195965.1ScaffoldFZHG00000000
SAMEA104140507
-
GCA_900195955.1ScaffoldFZHD00000000
SAMEA104140504
-
GCA_900195945.1ContigFZHN00000000
SAMEA104140506
-
GCA_900195935.1ScaffoldFZHK00000000
SAMEA104140513
-
GCA_900195925.1ScaffoldFZHC00000000
SAMEA104140512
-
GCA_900195915.1ScaffoldFZHB00000000
SAMEA104140503
-
GCA_900195905.1ScaffoldFZGZ00000000
SAMEA104140498
-
GCA_900537005.1ContigUNQU00000000
SAMEA104446556
ST73
GCA_900536995.1ContigUNQZ00000000
SAMEA104446550
ST73
GCA_900536965.1ContigUNQN00000000
SAMEA104446549
ST73
GCA_900536925.1ContigUNQR00000000
SAMEA104446548
ST73
GCA_900536955.1ContigUNQQ00000000
SAMEA104446547
ST73
GCA_900536905.1ContigUNQO00000000
SAMEA104446546
ST73
GCA_900536945.1ContigUNQM00000000
SAMEA104446545
ST73
GCA_900536935.1ContigUNQP00000000
SAMEA104446544
ST73
GCA_900536975.1ContigUNQS00000000
SAMEA104446543
ST73
GCA_900537045.1ScaffoldUNQW00000000
SAMEA104446557
ST73
GCA_900537015.1ScaffoldUNQV00000000
SAMEA104446555
ST73
GCA_900537035.1ScaffoldUNQY00000000
SAMEA104446554
ST73
GCA_900537025.1ScaffoldUNQX00000000
SAMEA104446553
ST73
GCA_900536915.1ScaffoldUNQL00000000
SAMEA104446552
ST73
GCA_900536985.1ScaffoldUNQT00000000
SAMEA104446551
ST73
GCA_900244885.2ContigOGPI00000000
SAMEA104446558
ST73
GCA_900196535.2Complete genomeSAMEA104140560
-
SRA Data Details
ParameterValue
Data volume, Gbases11
Data volume, Mbytes5456

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