U.S. flag

An official website of the United States government

Display Settings:

Format

Send to:

Choose Destination

Links from Nucleotide

Accession: PRJNA395587 ID: 395587

Pathogen physiological state has a greater effect on outcomes of challenge and validation studies than strain diversity

Assembly of a collection of Salmonella, L. monocytogenes, shiga toxin-producing E. More...
AccessionPRJNA395587
Data TypeGenome sequencing and assembly
ScopeMultispecies
Grants
  • "Pathogen physiological state has a greater effect on outcomes of challenge and validation studies than strain diversity" (Grant ID 2016CPS10, Center for Produce Safety)
SubmissionRegistration date: 24-Jul-2017
Cornell University
RelevanceIndustrial
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)7354
WGS master47
SRA Experiments47
Protein Sequences210032
Other datasets
BioSample47
Assembly47
Assembly details:
Assembly levelNumber of Assemblies
47
47
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_003384105.1ContigPNRN00000000SAMN07411310
FSL R9-5345
GCA_003418725.1ContigPDAS00000000SAMN07411306
2009EL-2050
GCA_003418605.1ContigPDAP00000000SAMN07411309
2016C-3325
GCA_003418715.1ContigPDAR00000000SAMN07411307
2012C-4704
GCA_003418505.1ContigPDAA00000000SAMN07411327
TVS355
GCA_003418805.1ContigPDAT00000000SAMN07411305
2009EL-2071
GCA_003418635.1ContigPDAQ00000000SAMN07411308
WI_06BC005151
GCA_003419045.1ContigPDAU00000000SAMN07411304
2014C-3598
GCA_003417995.1ContigPDAB00000000SAMN07411326
TVS354
GCA_003417915.1ContigPDAN00000000SAMN07411312
2015C-5140
GCA_003417815.1ContigPCZZ00000000SAMN07411328
CSU FSL E1-134
GCA_003418045.1ContigPDAC00000000SAMN07411325
TVS 353
GCA_003418305.1ContigPDAO00000000SAMN07411311
2014C-3989
GCA_003418215.1ContigPDAM00000000SAMN07411313
TW016501
GCA_003384075.1ContigPNRL00000000SAMN07411324
FSL C2-0008
GCA_003384055.1ContigPNRM00000000SAMN07411323
FSL S10-2161
GCA_003418175.1ContigPDAH00000000SAMN07411318
L2625
GCA_003418535.1ContigPDAG00000000SAMN07411319
PNUSAL001751
GCA_003418585.1ContigPDAI00000000SAMN07411317
G3975/DD6292; F6900
GCA_003418065.1ContigPDAD00000000SAMN07411322
18450-vaginal
GCA_003418165.1ContigPDAL00000000SAMN07411314
TS27/L4738/DD6304
GCA_003418125.1ContigPDAF00000000SAMN07411320
PNSUAL000954
GCA_003418085.1ContigPDAE00000000SAMN07411321
LM36
GCA_003417835.1ContigPDAK00000000SAMN07411315
G6054
GCA_003417825.1ContigPDAJ00000000SAMN07411316
TS26/L4742/DD6303
GCA_003418815.1ContigPDAV00000000SAMN07411303
2015K-0277
GCA_003417965.1ContigPDBF00000000SAMN07411293
2011K-0033
GCA_003417925.1ContigPDBD00000000SAMN07411295
2015K-0961
GCA_003418295.1ContigPDAW00000000SAMN07411302
531954
GCA_003418425.1ContigPDBI00000000SAMN07411290
MDD314R
GCA_003418435.1ContigPDBN00000000SAMN07411285
CFSAN016159
GCA_003418325.1ContigPDBA00000000SAMN07411298
2012K-1623
GCA_003417935.1ContigPDBE00000000SAMN07411294
BAC0800000628
GCA_003418365.1ContigPDBC00000000SAMN07411296
LJH#720
GCA_003418855.1ContigPDBG00000000SAMN07411292
43845
GCA_003418895.1ContigPDBK00000000SAMN07411288
BAA 1045
GCA_003418965.1ContigPDBB00000000SAMN07411297
LJH#1217
GCA_003418975.1ContigPDBH00000000SAMN07411291
MDD314
GCA_003419115.1ContigPDBJ00000000SAMN07411289
BAA-1593
GCA_003419105.1ContigPDBP00000000SAMN07411283
CFSAN001371
GCA_003419165.1ContigPDBM00000000SAMN07411286
PTVS001
GCA_003419275.1ContigPDAZ00000000SAMN07411299
2016K-0150
GCA_003418995.1ContigPDAX00000000SAMN07411301
AM12179
GCA_003419175.1ContigPDAY00000000SAMN07411300
2011K-1002
GCA_003419375.1ContigPDBO00000000SAMN07411284
K2442
GCA_003419335.1ContigPDBQ00000000SAMN07411282
CFSAN004126
GCA_003419305.1ContigPDBL00000000SAMN07411287
PTVS026
SRA Data Details
ParameterValue
Data volume, Gbases22
Data volume, Mbytes10991

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center