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Accession: PRJNA433857 ID: 433857

Whole genome analysis of multidrug-resistant, extended-spectrum beta-lactamase-producing bacteria isolated from dogs Genome sequencing and assembly

Whole genome analysis of multidrug-resistant, extended-spectrum beta-lactamase-producing bacteria isolated from dogs
AccessionPRJNA433857
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsBoehmer T et al., "Phenotypic characterization and whole genome analysis of extended-spectrum beta-lactamase-producing bacteria isolated from dogs in Germany.", PLoS One, 2018;13(10):e0206252
SubmissionRegistration date: 12-Feb-2018
Northern Arizona University
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)12669
WGS master93
SRA Experiments93
Protein Sequences452662
Publications
PubMed1
PMC1
Other datasets
BioSample93
Assembly93
Assembly details:
Assembly levelNumber of Assemblies
93
93
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_003322775.1ContigPUTR00000000SAMN08519207
AFG_SD01_1510_Aca_091
GCA_003323285.1ContigPUTQ00000000SAMN08519208
AFG_SD03_1510_Ahy_093
GCA_003321545.1ContigPUQH00000000SAMN08519295
GER_MD12_1511_Ecl_086
GCA_003321525.1ContigPUQG00000000SAMN08519296
GER_MD08_1505_Ecl_089
GCA_003331015.1ContigPUQF00000000SAMN08519297
GER_MD16_1505_Eko_090
GCA_003322915.1ContigPURU00000000SAMN08519256
GER_MD14_1507_Eco_053
GCA_003322895.1ContigPUQV00000000SAMN08519281
GER_CD72_1507_Eco_080
GCA_003322875.1ContigPURH00000000SAMN08519269
GER_MD01_1603_Eco_066
GCA_003322835.1ContigPUQZ00000000SAMN08519277
GER_MD77_1507_Eco_075
GCA_003322845.1ContigPUQY00000000SAMN08519278
GER_MD77_1507_Eco_077
GCA_003321725.1ContigPUQT00000000SAMN08519283
GER_CD72_1507_Eco_082
GCA_003321715.1ContigPUQR00000000SAMN08519285
GER_EN01_1501_Eco_087
GCA_003321645.1ContigPUQM00000000SAMN08519290
AFG_SD07_1510_Eco_097
GCA_003321665.1ContigPUQL00000000SAMN08519291
AFG_SD08_1510_Eco_098
GCA_003321635.1ContigPUQN00000000SAMN08519289
AFG_SD06_1510_Eco_096
GCA_003321655.1ContigPUQO00000000SAMN08519288
AFG_SD05_1510_Eco_095
GCA_003321595.1ContigPUQI00000000SAMN08519294
KOS_SF06_1605_Eco_101
GCA_003321585.1ContigPUQK00000000SAMN08519292
GER_MD90_1604_Eco_099
GCA_003321575.1ContigPUQJ00000000SAMN08519293
GER_MD67_1606_Eco_100
GCA_003322795.1ContigPUQW00000000SAMN08519280
GER_CD71_1507_Eco_079
GCA_003322785.1ContigPUTO00000000SAMN08519210
GER_MD06_1505_Eco_002
GCA_003322735.1ContigPUQS00000000SAMN08519284
CRO_MD01_1509_Eco_084
GCA_003322745.1ContigPUTP00000000SAMN08519209
GER_MD01_1505_Eco_001
GCA_003322675.1ContigPUTI00000000SAMN08519216
GER_MD01_1505_Eco_009
GCA_003322665.1ContigPUTL00000000SAMN08519213
GER_MD03_1505_Eco_005
GCA_003322685.1ContigPUTJ00000000SAMN08519215
GER_MD06_1505_Eco_007
GCA_003322655.1ContigPUTK00000000SAMN08519214
GER_MD03_1505_Eco_006
GCA_003322605.1ContigPUTC00000000SAMN08519222
GER_MD03_1505_Eco_015
GCA_003322615.1ContigPUTD00000000SAMN08519221
GER_MD07_1505_Eco_014
GCA_003322595.1ContigPUTE00000000SAMN08519220
GER_MD07_1505_Eco_013
GCA_003322575.1ContigPUTG00000000SAMN08519218
GER_MD03_1505_Eco_011
GCA_003322525.1ContigPUSY00000000SAMN08519226
GER_MD08_1505_Eco_019
GCA_003322535.1ContigPUTA00000000SAMN08519224
GER_MD03_1505_Eco_017
GCA_003322515.1ContigPUTB00000000SAMN08519223
GER_MD03_1505_Eco_016
GCA_003322495.1ContigPUSX00000000SAMN08519227
GER_MD11_1505_Eco_020
GCA_003322455.1ContigPUSP00000000SAMN08519235
GER_MD11_1505_Eco_030
GCA_003322465.1ContigPUSV00000000SAMN08519229
GER_MD11_1505_Eco_023
GCA_003322425.1ContigPUSL00000000SAMN08519239
GER_MD08_1505_Eco_035
GCA_003322415.1ContigPUSR00000000SAMN08519233
GER_MD11_1505_Eco_027
GCA_003322395.1ContigPUSQ00000000SAMN08519234
GER_MD11_1505_Eco_029
GCA_003322375.1ContigPUSN00000000SAMN08519237
GER_MD11_1505_Eco_032
GCA_003322335.1ContigPUSE00000000SAMN08519246
GER_MD11_1505_Eco_042
GCA_003322345.1ContigPUSF00000000SAMN08519245
GER_MD03_1505_Eco_041
GCA_003322305.1ContigPUSH00000000SAMN08519243
GER_MD17_1505_Eco_039
GCA_003322295.1ContigPUSK00000000SAMN08519240
GER_MD11_1505_Eco_036
GCA_003322225.1ContigPUSD00000000SAMN08519247
GER_MD14_1505_Eco_043
GCA_003322245.1ContigPURX00000000SAMN08519253
GER_MD03_1507_Eco_050
GCA_003322235.1ContigPUSA00000000SAMN08519250
GER_MD01_1505_Eco_047
GCA_003322215.1ContigPURZ00000000SAMN08519251
GER_MD01_1505_Eco_048
GCA_003322195.1ContigPURW00000000SAMN08519254
GER_MD14_1507_Eco_051
GCA_003322145.1ContigPURT00000000SAMN08519257
GER_MD01_1509_Eco_054
GCA_003322135.1ContigPURS00000000SAMN08519258
GER_MD01_1509_Eco_055
GCA_003322155.1ContigPURV00000000SAMN08519255
GER_MD15_1507_Eco_052
GCA_003322085.1ContigPURQ00000000SAMN08519260
GER_MD01_1509_Eco_057
GCA_003322055.1ContigPURO00000000SAMN08519262
GER_MD01_1509_Eco_059
GCA_003322065.1ContigPURR00000000SAMN08519259
GER_MD01_1509_Eco_056
GCA_003322075.1ContigPURP00000000SAMN08519261
GER_MD01_1509_Eco_058
GCA_003321995.1ContigPURK00000000SAMN08519266
GER_MD14_1511_Eco_063
GCA_003322005.1ContigPURN00000000SAMN08519263
GER_MD02_1511_Eco_060
GCA_003321985.1ContigPURM00000000SAMN08519264
GER_MD02_1511_Eco_061
GCA_003321975.1ContigPURG00000000SAMN08519270
UKR_MD01_1506_Eco_067
GCA_003321935.1ContigPURJ00000000SAMN08519267
GER_MD02_1511_Eco_064
GCA_003321915.1ContigPURE00000000SAMN08519272
UKR_MD01_1506_Eco_069
GCA_003321925.1ContigPURF00000000SAMN08519271
UKR_MD01_1506_Eco_068
GCA_003321855.1ContigPURA00000000SAMN08519276
KOS_SD05_1507_Eco_074
GCA_003321845.1ContigPURB00000000SAMN08519275
KOS_SD04_1507_Eco_073
GCA_003321865.1ContigPURC00000000SAMN08519274
KOS_DS02_1507_Eco_071
GCA_003321835.1ContigPURD00000000SAMN08519273
KOS_DS01_1507_Eco_070
GCA_003321795.1ContigPUQX00000000SAMN08519279
GER_CD71_1507_Eco_078
GCA_003321805.1ContigPUQU00000000SAMN08519282
GER_CD72_1507_Eco_081
GCA_003321755.1ContigPUQQ00000000SAMN08519286
GER_EN02_1501_Eco_088
GCA_003321765.1ContigPUQP00000000SAMN08519287
AFG_SD04_1510_Eco_094
GCA_003323295.1ContigPUTM00000000SAMN08519212
GER_MD01_1505_Eco_004
GCA_003323275.1ContigPUTN00000000SAMN08519211
GER_MD03_1505_Eco_003
GCA_003323235.1ContigPUTH00000000SAMN08519217
GER_MD03_1505_Eco_010
GCA_003323245.1ContigPUTF00000000SAMN08519219
GER_MD07_1505_Eco_012
GCA_003323205.1ContigPUSW00000000SAMN08519228
GER_MD11_1505_Eco_021
GCA_003323185.1ContigPUST00000000SAMN08519231
GER_MD11_1505_Eco_025
GCA_003323175.1ContigPUSZ00000000SAMN08519225
GER_MD03_1505_Eco_018
GCA_003323075.1ContigPUSJ00000000SAMN08519241
GER_MD14_1505_Eco_037
GCA_003323085.1ContigPUSM00000000SAMN08519238
GER_MD02_1505_Eco_034
GCA_003323155.1ContigPUSU00000000SAMN08519230
GER_MD11_1505_Eco_024
GCA_003323135.1ContigPUSO00000000SAMN08519236
GER_MD11_1505_Eco_031
GCA_003323095.1ContigPUSS00000000SAMN08519232
GER_MD11_1505_Eco_026
GCA_003323025.1ContigPUSI00000000SAMN08519242
GER_MD14_1505_Eco_038
GCA_003323015.1ContigPUSC00000000SAMN08519248
GER_MD14_1505_Eco_044
GCA_003323005.1ContigPUSB00000000SAMN08519249
GER_MD17_1505_Eco_045
GCA_003322995.1ContigPUSG00000000SAMN08519244
GER_MD02_1505_Eco_040
GCA_003322925.1ContigPURL00000000SAMN08519265
GER_MD06_1511_Eco_062
GCA_003322935.1ContigPURI00000000SAMN08519268
GER_MD06_1511_Eco_065
GCA_003322945.1ContigPURY00000000SAMN08519252
GER_MD10_1505_Pmi_049
GCA_003321505.1ContigPUQE00000000SAMN08519298
GER_MD14_1510_Pae_083
GCA_003331055.1ContigPUQD00000000SAMN08519299
AFG_SD02_1510_Pfu_092
SRA Data Details
ParameterValue
Data volume, Gbases51
Data volume, Mbytes24525

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