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Accession: PRJNA400107 ID: 400107

Escherichia coli

Escherichia coli Genome sequencing and assembly

See Genome Information for Escherichia coli
mcr-1-positive Escherichia coli from human carriages
AccessionPRJNA400107
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
SubmissionRegistration date: 9-Jul-2018
China Agricultural University
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)43183
WGS master287
Other datasets
BioSample287
Assembly287
Assembly details:
Assembly levelNumber of Assemblies
260
27
287
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_003301045.1ScaffoldNRWC00000000SAMN07556614
A425
GCA_003300985.1ScaffoldNRVZ00000000SAMN07556617
A389
GCA_003301035.1ScaffoldNRWA00000000SAMN07556616
A431
GCA_003302695.1ScaffoldNRYQ00000000SAMN07556548
A224
GCA_003302725.1ScaffoldNRYR00000000SAMN07556547
A404
GCA_003302685.1ScaffoldNRYP00000000SAMN07556549
A264
GCA_003302655.1ContigNRYM00000000SAMN07556552
A123
GCA_003302635.1ContigNRYL00000000SAMN07556553
A61
GCA_003302575.1ScaffoldNRYK00000000SAMN07556554
A20
GCA_003302565.1ContigNRYI00000000SAMN07556556
A408
GCA_003302545.1ScaffoldNRYJ00000000SAMN07556555
A411
GCA_003302465.1ContigNRYH00000000SAMN07556557
A409
GCA_003302445.1ScaffoldNRYE00000000SAMN07556560
A122
GCA_003302455.1ContigNRYG00000000SAMN07556558
A245
GCA_003302435.1ScaffoldNRXZ00000000SAMN07556565
740
GCA_003302375.1ScaffoldNRXX00000000SAMN07556567
126
GCA_003302365.1ScaffoldNRXW00000000SAMN07556568
A337
GCA_003302345.1ScaffoldNRXV00000000SAMN07556569
A22
GCA_003302315.1ScaffoldNRXU00000000SAMN07556570
A287
GCA_003302265.1ScaffoldNRXT00000000SAMN07556571
A367
GCA_003302215.1ScaffoldNRXP00000000SAMN07556575
A323
GCA_003302245.1ScaffoldNRXS00000000SAMN07556572
A38
GCA_003302135.1ScaffoldNRXL00000000SAMN07556579
A180
GCA_003302225.1ScaffoldNRXR00000000SAMN07556573
A181
GCA_003302145.1ScaffoldNRXM00000000SAMN07556578
A44
GCA_003302125.1ScaffoldNRXH00000000SAMN07556583
A26
GCA_003302115.1ScaffoldNRXJ00000000SAMN07556581
A192
GCA_003302045.1ScaffoldNRXG00000000SAMN07556584
A108
GCA_003301995.1ScaffoldNRXC00000000SAMN07556588
A8
GCA_003302005.1ScaffoldNRXD00000000SAMN07556587
A351
GCA_003302015.1ScaffoldNRXE00000000SAMN07556586
A329
GCA_003301945.1ScaffoldNRXA00000000SAMN07556590
A277
GCA_003301915.1ScaffoldNRWY00000000SAMN07556592
A426
GCA_003301885.1ScaffoldNRWX00000000SAMN07556593
A98
GCA_003301875.1ScaffoldNRWW00000000SAMN07556594
B102
GCA_003301845.1ScaffoldNRWV00000000SAMN07556595
A255
GCA_003301815.1ScaffoldNRWU00000000SAMN07556596
A377
GCA_003301785.1ScaffoldNRWT00000000SAMN07556597
A11
GCA_003301775.1ScaffoldNRWP00000000SAMN07556601
A273
GCA_003301735.1ContigNRWO00000000SAMN07556602
1257
GCA_003301685.1ScaffoldNRWN00000000SAMN07556603
A280
GCA_003301625.1ScaffoldNRWJ00000000SAMN07556607
A186
GCA_003301675.1ScaffoldNRWK00000000SAMN07556606
A205
GCA_003301575.1ScaffoldNRWG00000000SAMN07556610
A12
GCA_003301615.1ScaffoldNRWI00000000SAMN07556608
A71
GCA_003301555.1ScaffoldNRWE00000000SAMN07556612
A415
GCA_003304955.1ScaffoldNSAZ00000000SAMN07556487
1279
GCA_003304905.1ScaffoldNSAS00000000SAMN07556494
A209
GCA_003304915.1ScaffoldNSAU00000000SAMN07556492
1293
GCA_003304855.1ContigNSAR00000000SAMN07556495
A14
GCA_003304865.1ScaffoldNSAY00000000SAMN07556488
A84
GCA_003304835.1ScaffoldNSAX00000000SAMN07556489
737
GCA_003304785.1ScaffoldNSAP00000000SAMN07556497
A35
GCA_003304755.1ScaffoldNSAO00000000SAMN07556498
A137
GCA_003304725.1ScaffoldNRZN00000000SAMN07556525
A185
GCA_003304695.1ScaffoldNSAL00000000SAMN07556501
A60
GCA_003304675.1ScaffoldNSAK00000000SAMN07556502
A195
GCA_003304655.1ScaffoldNSAJ00000000SAMN07556503
3257
GCA_003304635.1ScaffoldNSAA00000000SAMN07556512
A432
GCA_003304615.1ContigNRZF00000000SAMN07556533
A236
GCA_003305015.1ScaffoldNSBI00000000SAMN07556478
A96
GCA_003305005.1ScaffoldNSBH00000000SAMN07556479
B146
GCA_003304595.1ScaffoldNRZE00000000SAMN07556534
A227
GCA_003304545.1ScaffoldNRYO00000000SAMN07556550
A418
GCA_003304555.1ScaffoldNRYU00000000SAMN07556544
A79
GCA_003304515.1ContigNRYN00000000SAMN07556551
A198
GCA_003304815.1ScaffoldNSAV00000000SAMN07556491
A85
GCA_003304775.1ScaffoldNSAG00000000SAMN07556506
A3
GCA_003304485.1ScaffoldNRYD00000000SAMN07556561
A336
GCA_003304475.1ScaffoldNRYB00000000SAMN07556563
A173
GCA_003304435.1ContigNRYC00000000SAMN07556562
A182
GCA_003304445.1ScaffoldNRYF00000000SAMN07556559
A7
GCA_003304375.1ScaffoldNRYA00000000SAMN07556564
A313
GCA_003304355.1ScaffoldNRXY00000000SAMN07556566
A349-1
GCA_003304345.1ContigNRXO00000000SAMN07556576
A211
GCA_003304335.1ScaffoldNRXI00000000SAMN07556582
A130
GCA_003304295.1ScaffoldNRXQ00000000SAMN07556574
A101
GCA_003304275.1ScaffoldNRXK00000000SAMN07556580
B106
GCA_003304255.1ScaffoldNRXB00000000SAMN07556589
A210
GCA_003304225.1ScaffoldNRWZ00000000SAMN07556591
A78
GCA_003304195.1ScaffoldNRWR00000000SAMN07556599
A433
GCA_003304205.1ScaffoldNRWS00000000SAMN07556598
A416
GCA_003304155.1ScaffoldNRWQ00000000SAMN07556600
A419
GCA_003304105.1ScaffoldNRWM00000000SAMN07556604
A10
GCA_003304075.1ScaffoldNRWH00000000SAMN07556609
A398
GCA_003304095.1ScaffoldNRWL00000000SAMN07556605
A306
GCA_003304035.1ScaffoldNSBK00000000SAMN07556476
A412
GCA_003304045.1ScaffoldNRWF00000000SAMN07556611
A429
GCA_003303985.1ScaffoldNSBG00000000SAMN07556480
A371
GCA_003303975.1ScaffoldNSBJ00000000SAMN07556477
A413
GCA_003303955.1ScaffoldNSBF00000000SAMN07556481
A219
GCA_003303915.1ContigNSBE00000000SAMN07556482
A2
GCA_003303905.1ScaffoldNSBC00000000SAMN07556484
A118
GCA_003303875.1ScaffoldNSBD00000000SAMN07556483
A215
GCA_003303855.1ScaffoldNSBB00000000SAMN07556485
A114
GCA_003303795.1ScaffoldNSBA00000000SAMN07556486
A50
GCA_003303785.1ScaffoldNSAW00000000SAMN07556490
1259
GCA_003303775.1ScaffoldNSAT00000000SAMN07556493
A348
GCA_003303755.1ScaffoldNSAQ00000000SAMN07556496
A97
GCA_003303715.1ScaffoldNSAN00000000SAMN07556499
A37
GCA_003303675.1ScaffoldNSAM00000000SAMN07556500
A168
GCA_003303665.1ScaffoldNSAH00000000SAMN07556505
A214
GCA_003303655.1ScaffoldNSAI00000000SAMN07556504
A161
GCA_003303615.1ScaffoldNSAF00000000SAMN07556507
A19
GCA_003303585.1ScaffoldNSAE00000000SAMN07556508
A76
GCA_003303565.1ScaffoldNSAD00000000SAMN07556509
A310
GCA_003303545.1ScaffoldNSAC00000000SAMN07556510
A213
GCA_003303495.1ScaffoldNSAB00000000SAMN07556511
A430
GCA_003303475.1ContigNRZY00000000SAMN07556514
A354
GCA_003303485.1ScaffoldNRZZ00000000SAMN07556513
A53
GCA_003303405.1ContigNRZX00000000SAMN07556515
A150
GCA_003303445.1ScaffoldNRZV00000000SAMN07556517
A368
GCA_003303395.1ScaffoldNRZW00000000SAMN07556516
A178
GCA_003303375.1ScaffoldNRZU00000000SAMN07556518
A278
GCA_003303255.1ScaffoldNRZS00000000SAMN07556520
A75
GCA_003303285.1ScaffoldNRZO00000000SAMN07556524
A17
GCA_003303235.1ScaffoldNRZP00000000SAMN07556523
A267
GCA_003303215.1ScaffoldNRZM00000000SAMN07556526
A344
GCA_003303125.1ScaffoldNRZJ00000000SAMN07556529
A40
GCA_003303195.1ScaffoldNRZL00000000SAMN07556527
A95
GCA_003303135.1ScaffoldNRZK00000000SAMN07556528
B10
GCA_003303105.1ScaffoldNRZI00000000SAMN07556530
A154
GCA_003303025.1ContigNRZD00000000SAMN07556535
A127
GCA_003303015.1ScaffoldNRZC00000000SAMN07556536
A4
GCA_003302925.1ScaffoldNRZA00000000SAMN07556538
A103
GCA_003302895.1ScaffoldNRYY00000000SAMN07556540
A276
GCA_003302915.1ScaffoldNRZB00000000SAMN07556537
A34
GCA_003302815.1ScaffoldNRYV00000000SAMN07556543
A5
GCA_003303355.1ScaffoldNRZT00000000SAMN07556519
A393
GCA_003303295.1ScaffoldNRZQ00000000SAMN07556522
A148
GCA_003303305.1ScaffoldNRZR00000000SAMN07556521
A74
GCA_003303045.1ScaffoldNRZG00000000SAMN07556532
A208
GCA_003303065.1ContigNRZH00000000SAMN07556531
A6
GCA_003302905.1ScaffoldNRYZ00000000SAMN07556539
A204
GCA_003302825.1ScaffoldNRYW00000000SAMN07556542
B132
GCA_003302785.1ScaffoldNRYT00000000SAMN07556545
A318
GCA_003302775.1ScaffoldNRYS00000000SAMN07556546
A434
GCA_003293265.1ScaffoldNRVS00000000SAMN07556624
A1-1
GCA_003293255.1ScaffoldNRVR00000000SAMN07556625
A48
GCA_003293225.1ScaffoldNRVP00000000SAMN07556627
A240
GCA_003293205.1ScaffoldNRVO00000000SAMN07556628
B78
GCA_003293415.1ScaffoldNRUZ00000000SAMN07556643
A106
GCA_003293345.1ScaffoldNRVX00000000SAMN07556619
A119
GCA_003293365.1ScaffoldNRWB00000000SAMN07556615
A81
GCA_003293565.1ScaffoldNRVV00000000SAMN07556621
A165
GCA_003293555.1ScaffoldNRVW00000000SAMN07556620
1269
GCA_003293515.1ScaffoldNRVM00000000SAMN07556630
A116
GCA_003293315.1ScaffoldNRVU00000000SAMN07556622
A158
GCA_003293295.1ScaffoldNRVT00000000SAMN07556623
A138
GCA_003293485.1ContigNRVJ00000000SAMN07556633
A275
GCA_003293445.1ScaffoldNRVG00000000SAMN07556636
A190
GCA_003293435.1ScaffoldNRVA00000000SAMN07556642
A248
GCA_003293185.1ScaffoldNRVL00000000SAMN07556631
A32
GCA_003293175.1ScaffoldNRVK00000000SAMN07556632
A144
GCA_003293145.1ScaffoldNRVH00000000SAMN07556635
A307
GCA_003293125.1ScaffoldNRVI00000000SAMN07556634
A93
GCA_003293115.1ScaffoldNRVF00000000SAMN07556637
1262
GCA_003293085.1ScaffoldNRVE00000000SAMN07556638
B215
GCA_003293055.1ScaffoldNRVC00000000SAMN07556640
A112
GCA_003293065.1ScaffoldNRVD00000000SAMN07556639
A330
GCA_003293035.1ScaffoldNRUY00000000SAMN07556644
A206
GCA_003293015.1ScaffoldNRUW00000000SAMN07556646
A421
GCA_003292995.1ScaffoldNRVB00000000SAMN07556641
A109
GCA_003292975.1ScaffoldNRUX00000000SAMN07556645
A30
GCA_003292935.1ScaffoldNRUV00000000SAMN07556647
3180
GCA_003292955.1ContigNRUT00000000SAMN07556649
A246
GCA_003292915.1ScaffoldNRUU00000000SAMN07556648
B211
GCA_003292895.1ScaffoldNRUS00000000SAMN07556650
A342
GCA_003292875.1ScaffoldNRUR00000000SAMN07556651
A39
GCA_003292855.1ScaffoldNRUO00000000SAMN07556654
A107
GCA_003292835.1ScaffoldNRUN00000000SAMN07556655
A105
GCA_003292775.1ContigNRUJ00000000SAMN07556659
A42
GCA_003292785.1ScaffoldNRUI00000000SAMN07556660
A29
GCA_003292795.1ScaffoldNRUL00000000SAMN07556657
A423
GCA_003292755.1ScaffoldNRUK00000000SAMN07556658
A300
GCA_003292735.1ContigNRUH00000000SAMN07556661
A23
GCA_003292685.1ScaffoldNRUG00000000SAMN07556662
A359
GCA_003292665.1ScaffoldNRUB00000000SAMN07556667
A241
GCA_003292675.1ScaffoldNRUE00000000SAMN07556664
A113
GCA_003292655.1ScaffoldNRUD00000000SAMN07556665
A90
GCA_003292635.1ScaffoldNRUF00000000SAMN07556663
1285
GCA_003292615.1ScaffoldNRUA00000000SAMN07556668
A244
GCA_003292595.1ScaffoldNRTZ00000000SAMN07556669
A200
GCA_003292565.1ScaffoldNRTY00000000SAMN07556670
A27
GCA_003292535.1ContigNRTW00000000SAMN07556672
A104
GCA_003292545.1ScaffoldNRTX00000000SAMN07556671
A260
GCA_003292515.1ScaffoldNRTV00000000SAMN07556673
A24
GCA_003292485.1ScaffoldNRTU00000000SAMN07556674
A297
GCA_003292465.1ScaffoldNRTT00000000SAMN07556675
1278
GCA_003292455.1ScaffoldNRTS00000000SAMN07556676
A251
GCA_003292435.1ScaffoldNRTR00000000SAMN07556677
A385
GCA_003292405.1ScaffoldNRTQ00000000SAMN07556678
A72
GCA_003292385.1ScaffoldNRTP00000000SAMN07556679
A188
GCA_003292375.1ScaffoldNRTO00000000SAMN07556680
B222
GCA_003292355.1ScaffoldNRTN00000000SAMN07556681
A59
GCA_003292315.1ScaffoldNRTL00000000SAMN07556683
B54
GCA_003292305.1ScaffoldNRTM00000000SAMN07556682
A67
GCA_003292295.1ScaffoldNRTK00000000SAMN07556684
3844
GCA_003292275.1ScaffoldNRTI00000000SAMN07556686
A242
GCA_003292235.1ScaffoldNRTH00000000SAMN07556687
A70
GCA_003292215.1ScaffoldNRTF00000000SAMN07556689
A68
GCA_003292225.1ScaffoldNRTG00000000SAMN07556688
A334
GCA_003292085.1ScaffoldPJIF00000000SAMN08148346
AH1
GCA_003292195.1ScaffoldNRTE00000000SAMN07556690
A141
GCA_003292145.1ScaffoldNRTB00000000SAMN07556693
A295
GCA_003292135.1ScaffoldNRTC00000000SAMN07556692
A417
GCA_003292155.1ScaffoldNRTD00000000SAMN07556691
A364
GCA_003292075.1ScaffoldPJIE00000000SAMN08148347
AH21
GCA_003292065.1ScaffoldPJIB00000000SAMN08148350
AH58
GCA_003292055.1ScaffoldPJHY00000000SAMN08148353
2685
GCA_003291995.1ScaffoldPJHR00000000SAMN08148360
GZ9
GCA_003292015.1ScaffoldPJHT00000000SAMN08148358
GZ14
GCA_003291975.1ScaffoldPJHO00000000SAMN08148363
HEB2
GCA_003291985.1ScaffoldPJHP00000000SAMN08148362
3768
GCA_003291945.1ScaffoldPJHN00000000SAMN08148364
HEB3
GCA_003291895.1ScaffoldPJHE00000000SAMN08148373
HLJ8
GCA_003291935.1ScaffoldPJHM00000000SAMN08148365
3421
GCA_003291905.1ScaffoldPJHF00000000SAMN08148372
HLJ48
GCA_003291875.1ContigPJHC00000000SAMN08148375
HUB4
GCA_003291855.1ScaffoldPJGY00000000SAMN08148379
HU4
GCA_003291825.1ScaffoldPJGW00000000SAMN08148381
JL18
GCA_003291775.1ScaffoldPJGS00000000SAMN08148385
1356
GCA_003291815.1ScaffoldPJGV00000000SAMN08148382
JL23
GCA_003291785.1ScaffoldPJGT00000000SAMN08148384
JL50
GCA_003291745.1ScaffoldPJGR00000000SAMN08148386
1373
GCA_003291735.1ScaffoldPJGQ00000000SAMN08148387
1375
GCA_003291695.1ScaffoldPJGL00000000SAMN08148392
LN48
GCA_003291675.1ScaffoldPJGK00000000SAMN08148393
LN6
GCA_003291665.1ScaffoldPJGE00000000SAMN08148399
3727
GCA_003291655.1ScaffoldPJGI00000000SAMN08148395
701
GCA_003291595.1ScaffoldPJGA00000000SAMN08148403
805
GCA_003291615.1ScaffoldPJGD00000000SAMN08148400
3731
GCA_003291585.1ScaffoldPJFZ00000000SAMN08148404
3039
GCA_003291575.1ScaffoldPJFY00000000SAMN08148405
3081
GCA_003291515.1ScaffoldPJFS00000000SAMN08148411
2140
GCA_003291535.1ContigPJFX00000000SAMN08148406
3083
GCA_003291505.1ScaffoldPJFL00000000SAMN08148418
TJ21
GCA_003291495.1ContigPJFK00000000SAMN08148419
TJ22
GCA_003291425.1ScaffoldPJID00000000SAMN08148348
AH30
GCA_003291455.1ScaffoldPJFI00000000SAMN08148421
741
GCA_003291435.1ScaffoldPJFD00000000SAMN08148426
XJ4
GCA_003291385.1ScaffoldPJIA00000000SAMN08148351
2673
GCA_003291415.1ScaffoldPJIC00000000SAMN08148349
AH47
GCA_003291285.1ScaffoldPJHV00000000SAMN08148356
GZ11
GCA_003291365.1ScaffoldPJHZ00000000SAMN08148352
2680
GCA_003291355.1ScaffoldPJHX00000000SAMN08148354
GS11
GCA_003291305.1ScaffoldPJHU00000000SAMN08148357
GZ13
GCA_003291315.1ScaffoldPJHW00000000SAMN08148355
GS52
GCA_003291275.1ScaffoldPJHS00000000SAMN08148359
GZ4
GCA_003291255.1ScaffoldPJHQ00000000SAMN08148361
3759
GCA_003291235.1ContigPJHL00000000SAMN08148366
3432
GCA_003291195.1ScaffoldPJHJ00000000SAMN08148368
3503
GCA_003291175.1ScaffoldPJHI00000000SAMN08148369
3510
GCA_003291185.1ScaffoldPJHK00000000SAMN08148367
3468
GCA_003291155.1ScaffoldPJHH00000000SAMN08148370
HLJ31
GCA_003291095.1ScaffoldPJHB00000000SAMN08148376
HUB6
GCA_003291115.1ContigPJHG00000000SAMN08148371
HLJ46
GCA_003291105.1ScaffoldPJHD00000000SAMN08148374
HUB1
GCA_003291075.1ScaffoldPJHA00000000SAMN08148377
HU13
GCA_003291015.1ScaffoldPJGU00000000SAMN08148383
JL39
GCA_003291035.1ScaffoldPJGZ00000000SAMN08148378
HU3
GCA_003291025.1ScaffoldPJGX00000000SAMN08148380
HU61
GCA_003290995.1ScaffoldPJGP00000000SAMN08148388
1379
GCA_003290955.1ContigPJGO00000000SAMN08148389
LN10
GCA_003290945.1ScaffoldPJGN00000000SAMN08148390
LN23
GCA_003290935.1ScaffoldPJGM00000000SAMN08148391
LN38
GCA_003290915.1ScaffoldPJGJ00000000SAMN08148394
699
GCA_003290875.1ScaffoldPJGH00000000SAMN08148396
707
GCA_003290845.1ScaffoldPJGF00000000SAMN08148398
730
GCA_003290855.1ScaffoldPJGG00000000SAMN08148397
712
GCA_003290835.1ScaffoldPJGC00000000SAMN08148401
QH38
GCA_003290755.1ScaffoldPJFU00000000SAMN08148409
3150
GCA_003290775.1ScaffoldPJFW00000000SAMN08148407
3095
GCA_003290785.1ScaffoldPJGB00000000SAMN08148402
799
GCA_003290765.1ScaffoldPJFV00000000SAMN08148408
1600
GCA_003290705.1ScaffoldPJFT00000000SAMN08148410
3167
GCA_003290685.1ScaffoldPJFQ00000000SAMN08148413
SC9
GCA_003290695.1ScaffoldPJFR00000000SAMN08148412
2142
GCA_003290675.1ScaffoldPJFP00000000SAMN08148414
SC2
GCA_003290625.1ScaffoldPJFO00000000SAMN08148415
SC29
GCA_003290605.1ScaffoldPJFM00000000SAMN08148417
TJ2
GCA_003290615.1ScaffoldPJFN00000000SAMN08148416
SC44
GCA_003290595.1ScaffoldPJFJ00000000SAMN08148420
TJ32
GCA_003290575.1ScaffoldPJFG00000000SAMN08148423
748
GCA_003290535.1ScaffoldPJFE00000000SAMN08148425
809
GCA_003290525.1ScaffoldPJFH00000000SAMN08148422
743
GCA_003290515.1ScaffoldPJFF00000000SAMN08148424
808

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