Escherichia coli (ID 417344) - BioProject

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Accession: PRJNA417344 ID: 417344

Escherichia coli

Escherichia coli Genome sequencing and assembly

See Genome Information for Escherichia coli

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ESBL-EC from animal

Accession	PRJNA417344
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications	Wu C et al., "Rapid rise of the ESBL and mcr-1 genes in Escherichia coli of chicken origin in China, 2008-2014.", Emerg Microbes Infect, 2018 Mar 14;7(1):30
Grants	"the National Natural Science Foundation of China" (Grant ID 31572568, National Science Foundation) "the National Natural Science Foundation of China" (Grant ID 81661138002, National Science Foundation) "the National Key Research and Development Program of China" (Grant ID 2016YFD0501301, AAA) "the National Key Research and Development Program of China" (Grant ID 2016YFD0501304, AAA) "the National Key Research and Development Program of China" (Grant ID 2016YFD0501305, AAA) "National Key Basic Research Program of China" (Grant ID 2013CB127200, 973)
Submission	Registration date: 19-Mar-2018 China Aricultural University
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	41203
WGS master	79
Publications
PubMed	1
PMC	1
Other datasets
BioSample	81
Assembly	79

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

72
7
79

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_003010375.1	PGLO00000000	SAMN07983251	11c13	Escherichia coli
GCA_003010385.1	PGLP00000000	SAMN07983250	LCD33	Escherichia coli
GCA_003010355.1	PGLN00000000	SAMN07983252	EZZ1-6	Escherichia coli
GCA_003010335.1	PGLM00000000	SAMN07983253	sc12-96	Escherichia coli
GCA_003010235.1	PGLH00000000	SAMN07983258	13f2	Escherichia coli
GCA_003010295.1	PGLL00000000	SAMN07983254	11a9	Escherichia coli
GCA_003010215.1	PGLG00000000	SAMN07983259	XF1-3g	Escherichia coli
GCA_003010285.1	PGLK00000000	SAMN07983255	ZZ1-5g	Escherichia coli
GCA_003010265.1	PGLJ00000000	SAMN07983256	GZC09-14	Escherichia coli
GCA_003010195.1	PGLF00000000	SAMN07983260	sc12-93	Escherichia coli
GCA_003010245.1	PGLI00000000	SAMN07983257	13b2	Escherichia coli
GCA_003010165.1	PGLE00000000	SAMN07983261	12f5	Escherichia coli
GCA_003010155.1	PGLD00000000	SAMN07983262	13h2	Escherichia coli
GCA_003010125.1	PGLC00000000	SAMN07983263	sc14-188	Escherichia coli
GCA_003010095.1	PGLA00000000	SAMN07983265	sc12-97	Escherichia coli
GCA_003010075.1	PGKZ00000000	SAMN07983266	zlp18	Escherichia coli
GCA_003010105.1	PGLB00000000	SAMN07983264	13h5	Escherichia coli
GCA_003010055.1	PGKY00000000	SAMN07983267	13j4	Escherichia coli
GCA_003009995.1	PGKW00000000	SAMN07983269	Eqsg1-6	Escherichia coli
GCA_003010005.1	PGKV00000000	SAMN07983270	sc11-30	Escherichia coli
GCA_003010015.1	PGKX00000000	SAMN07983268	sc12-98	Escherichia coli
GCA_003009975.1	PGKU00000000	SAMN07983271	sc11-29	Escherichia coli
GCA_003009915.1	PGKS00000000	SAMN07983273	13h3	Escherichia coli
GCA_003009715.1	PJRM00000000	SAMN08180604	12c5	Escherichia coli
GCA_003009935.1	PGKT00000000	SAMN07983272	13h4	Escherichia coli
GCA_003009885.1	PGKQ00000000	SAMN07983276	sc12-91	Escherichia coli
GCA_003009875.1	PGKP00000000	SAMN07983277	CF10	Escherichia coli
GCA_003009725.1	PKMY00000000	SAMN08238410	8-19	Escherichia coli
GCA_003008745.1	PGIU00000000	SAMN07983326	YJC9	Escherichia coli
GCA_003008665.1	PGIS00000000	SAMN07983328	sc12-62	Escherichia coli
GCA_003008655.1	PGIT00000000	SAMN07983327	sc14-184	Escherichia coli
GCA_003009695.1	PGKR00000000	SAMN07983275	GZC11-6	Escherichia coli
GCA_003009675.1	PGKO00000000	SAMN07983278	11c5	Escherichia coli
GCA_003009635.1	PGKN00000000	SAMN07983279	12f7	Escherichia coli
GCA_003009645.1	PGKM00000000	SAMN07983280	GZC10-13	Escherichia coli
GCA_003009615.1	PGKL00000000	SAMN07983281	E8-1	Escherichia coli
GCA_003009585.1	PGKK00000000	SAMN07983282	13h1	Escherichia coli
GCA_003009535.1	PGKI00000000	SAMN07983284	sc12-92	Escherichia coli
GCA_003009555.1	PGKJ00000000	SAMN07983283	12c2	Escherichia coli
GCA_003009505.1	PGKG00000000	SAMN07983286	8-2	Escherichia coli
GCA_003009545.1	PGKH00000000	SAMN07983285	Eqsg1-4g	Escherichia coli
GCA_003009495.1	PGKF00000000	SAMN07983287	10f58	Escherichia coli
GCA_003009455.1	PGKD00000000	SAMN07983289	11a5	Escherichia coli
GCA_003009465.1	PGKE00000000	SAMN07983288	sc14-204	Escherichia coli
GCA_003009405.1	PGKB00000000	SAMN07983291	11a6	Escherichia coli
GCA_003009435.1	PGKC00000000	SAMN07983290	10f54	Escherichia coli
GCA_003009375.1	PGKA00000000	SAMN07983292	13j6	Escherichia coli
GCA_003009355.1	PGJZ00000000	SAMN07983293	12c1	Escherichia coli
GCA_003009365.1	PGJY00000000	SAMN07983294	NC3-1	Escherichia coli
GCA_003009255.1	PGJS00000000	SAMN07983300	XF1-3f	Escherichia coli
GCA_003009335.1	PGJX00000000	SAMN07983295	12b3	Escherichia coli
GCA_003009315.1	PGJW00000000	SAMN07983296	GZC09-12	Escherichia coli
GCA_003009265.1	PGJU00000000	SAMN07983298	GZC12-13	Escherichia coli
GCA_003009275.1	PGJV00000000	SAMN07983297	12c11	Escherichia coli
GCA_003009215.1	PGJR00000000	SAMN07983301	sc14-202	Escherichia coli
GCA_003009205.1	PGJT00000000	SAMN07983299	13f2-1	Escherichia coli
GCA_003009195.1	PGJQ00000000	SAMN07983302	ECRLC09	Escherichia coli
GCA_003009175.1	PGJP00000000	SAMN07983303	10f60	Escherichia coli
GCA_003009135.1	PGJN00000000	SAMN07983305	E11-3	Escherichia coli
GCA_003009145.1	PGJO00000000	SAMN07983304	sc12-100	Escherichia coli
GCA_003009115.1	PTJL00000000	SAMN07983306	EXF1-6 2013	Escherichia coli
GCA_003009055.1	PGJL00000000	SAMN07983308	11a2	Escherichia coli
GCA_003009095.1	PGJM00000000	SAMN07983307	GZC09-15	Escherichia coli
GCA_003009065.1	PGJK00000000	SAMN07983309	c83612	Escherichia coli
GCA_003009015.1	PGJI00000000	SAMN07983311	12c7	Escherichia coli
GCA_003009035.1	PGJJ00000000	SAMN07983310	Ehw1-5f	Escherichia coli
GCA_003008995.1	PGJH00000000	SAMN07983312	sc14-205	Escherichia coli
GCA_003008975.1	PGJG00000000	SAMN07983313	sc13-121	Escherichia coli
GCA_003008935.1	PGJE00000000	SAMN07983315	GZC13-7	Escherichia coli
GCA_003008945.1	PGJF00000000	SAMN07983314	HDC9	Escherichia coli
GCA_003008915.1	PGJD00000000	SAMN07983316	sc11-25	Escherichia coli
GCA_003008895.1	PGJC00000000	SAMN07983317	12f4	Escherichia coli
GCA_003008875.1	PGJB00000000	SAMN07983318	sc12-99	Escherichia coli
GCA_003008855.1	PGIZ00000000	SAMN07983320	11f7	Escherichia coli
GCA_003008835.1	PGJA00000000	SAMN07983319	sc14-186	Escherichia coli
GCA_003008735.1	PGIW00000000	SAMN07983323	GZC12-1	Escherichia coli
GCA_003008815.1	PGIY00000000	SAMN07983321	sc14-203	Escherichia coli
GCA_003008755.1	PGIX00000000	SAMN07983322	BBZ2-6	Escherichia coli
GCA_003008775.1	PGIV00000000	SAMN07983325	12c8	Escherichia coli

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Escherichia coli Genome sequencing and assembly

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