Whole genome sequences of VT2f-producing E. coli (ID 338936) - BioProject

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Accession: PRJEB12203 ID: 338936

Whole genome sequences of VT2f-producing E. coli

Whole genome characterization of VTEC producing the VT2f variant isolated from HUS and comparison of isolates from HUS, uncomplicated diarrhea, and healthy pigeons

VT2f-producing VTEC were thought to be adapted to pigeons but their isolation from patients with diarrhoea has recently questioned this assumption. More...

Accession	PRJEB12203; ENA-SUBMISSION: ERA548628
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Submission	Registration date: 15-Aug-2016 ISTITUTO SUPERIORE DI SANITA

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	4975
WGS master	22
Other datasets
BioSample	22
Assembly	22

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

4
18
22

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_900015995.1	FBVD00000000	SAMEA3715965	M858	Escherichia coli
GCA_900016135.1	FBUT00000000	SAMEA3715982	ED444	Escherichia coli
GCA_900016085.1	FBUX00000000	SAMEA3715978	ED366	Escherichia coli
GCA_900016125.1	FBVG00000000	SAMEA3715984	EF467	Escherichia coli
GCA_900016065.1	FBUO00000000	SAMEA3715977	ED363	Escherichia coli
GCA_900016005.1	FBUM00000000	SAMEA3715966	M859	Escherichia coli
GCA_900016115.1	FBUU00000000	SAMEA3715981	ED430	Escherichia coli
GCA_900016015.1	FBVE00000000	SAMEA3715971	BCW5746	Escherichia coli
GCA_900016055.1	FBVB00000000	SAMEA3715974	BCW5717	Escherichia coli
GCA_900016375.1	FBUN00000000	SAMEA3715975	ED360	Escherichia coli
GCA_900016035.1	FBUY00000000	SAMEA3715970	BCW5711	Escherichia coli
GCA_900016075.1	FBVF00000000	SAMEA3715976	ED361	Escherichia coli
GCA_900016095.1	FBUZ00000000	SAMEA3715980	ED377	Escherichia coli
GCA_900016045.1	FBUP00000000	SAMEA3715972	BCW5743	Escherichia coli
GCA_900016365.1	FBUS00000000	SAMEA3715967	M884	Escherichia coli
GCA_900007745.1	FBUW00000000	SAMEA3715979	ED369	Escherichia coli
GCA_900016025.1	FBUR00000000	SAMEA3715973	BCW5739	Escherichia coli
GCA_900016105.1	FBVC00000000	SAMEA3715983	EF453	Escherichia coli
GCA_900015985.1	FBUQ00000000	SAMEA3715964	M856	Escherichia coli
GCA_900007725.1	FBUV00000000	SAMEA3715968	M885	Escherichia coli
GCA_900009835.1	FBVA00000000	SAMEA3715985	EF476	Escherichia coli
GCA_900007735.1	FBUL00000000	SAMEA3715969	M900	Escherichia coli

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Whole genome sequences of VT2f-producing E. coli

Whole genome characterization of VTEC producing the VT2f variant isolated from HUS and comparison of isolates from HUS, uncomplicated diarrhea, and healthy pigeons

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