Listeria monocytogenes (ID 1134122) - BioProject

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Accession: PRJNA1134122 ID: 1134122

Listeria monocytogenes

Oxford Nanopore versus Illumina WGS for Listeria monocytogenes genotyping

See Genome Information for Listeria monocytogenes

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WGS of diverse Listeria monocytogenes isolates to evaluate the performance of ONT for outbreak detection and source attribution

Accession	PRJNA1134122
Data Type	Genome sequencing and assembly, Raw sequence reads
Scope	Multiisolate
Organism	Listeria monocytogenes[Taxonomy ID: 1639] Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria; Listeria monocytogenes
Submission	Registration date: 10-Jul-2024 University of Zurich

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	119
Protein Sequences	228367
Other datasets
BioSample	78
Assembly	78

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Total

78
78

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_041799445.1	2	SAMN42394117	N19-1094	Listeria monocytogenes
GCA_041795475.1	2	SAMN42394118	N21-0399	Listeria monocytogenes
GCA_041791645.1	2	SAMN42394119	N22-1529	Listeria monocytogenes
GCA_041787955.1	2	SAMN42394120	N21-2978	Listeria monocytogenes
GCA_041785485.1	2	SAMN42394121	N23-0743	Listeria monocytogenes
GCA_041781785.1	2	SAMN42394122	N20-0304	Listeria monocytogenes
GCA_041777925.1	2	SAMN42394123	N21-2956	Listeria monocytogenes
GCA_041775095.1	2	SAMN42394124	N23-1883	Listeria monocytogenes
GCA_041771805.1	3	SAMN42394125	N23-0854	Listeria monocytogenes
GCA_041768315.1	2	SAMN42394126	N23-2678	Listeria monocytogenes
GCA_041765765.1	2	SAMN42394127	N22-1077	Listeria monocytogenes
GCA_041765615.1	1	SAMN42394128	N23-2254	Listeria monocytogenes
GCA_041765605.1	1	SAMN42394129	N16-2501	Listeria monocytogenes
GCA_041765555.1	1	SAMN42394130	N20-2538	Listeria monocytogenes
GCA_041765545.1	1	SAMN42394131	N21-0276	Listeria monocytogenes
GCA_041765535.1	2	SAMN42394132	N21-0290	Listeria monocytogenes
GCA_041765525.1	1	SAMN42394133	N21-0527	Listeria monocytogenes
GCA_041765515.1	2	SAMN42394134	N21-0849	Listeria monocytogenes
GCA_041765505.1	2	SAMN42394135	N21-1043	Listeria monocytogenes
GCA_041765495.1	2	SAMN42394136	N22-3360	Listeria monocytogenes
GCA_041765485.1	1	SAMN42394137	N23-0572	Listeria monocytogenes
GCA_041765475.1	2	SAMN42394139	N23-1574	Listeria monocytogenes
GCA_041765465.1	1	SAMN42394140	N23-1635	Listeria monocytogenes
GCA_041765455.1	1	SAMN42394142	N23-3441	Listeria monocytogenes
GCA_041765445.1	2	SAMN42394145	N21-1215	Listeria monocytogenes
GCA_041765095.1	1	SAMN32990935	N22-1530	Listeria monocytogenes
GCA_041765085.1	1	SAMN42394138	N23-0666	Listeria monocytogenes
GCA_041765075.1	2	SAMN42394141	N23-2242	Listeria monocytogenes
GCA_041765065.1	1	SAMN42394143	N24-0461	Listeria monocytogenes
GCA_041765055.1	1	SAMN42394144	N21-0528	Listeria monocytogenes
GCA_041765045.1	1	SAMN42394146	N22-0468	Listeria monocytogenes
GCA_041765035.1	2	SAMN42394147	N22-0614	Listeria monocytogenes
GCA_041765025.1	2	SAMN42394148	N22-1391	Listeria monocytogenes
GCA_041765015.1	2	SAMN42394149	N22-1823	Listeria monocytogenes
GCA_041765005.1	1	SAMN42394150	N22-1996	Listeria monocytogenes
GCA_041764995.1	1	SAMN42394151	N22-2859	Listeria monocytogenes
GCA_041764985.1	2	SAMN42394152	N23-0052	Listeria monocytogenes
GCA_041764975.1	1	SAMN42394153	N23-0099	Listeria monocytogenes
GCA_041764965.1	1	SAMN42394154	N23-0795	Listeria monocytogenes
GCA_041764955.1	1	SAMN42394155	N23-2450	Listeria monocytogenes
GCA_041764945.1	1	SAMN42394156	N23-2796	Listeria monocytogenes
GCA_041764935.1	1	SAMN42394157	N23-2921	Listeria monocytogenes
GCA_041764925.1	1	SAMN42394158	N23-3369	Listeria monocytogenes
GCA_041764915.1	2	SAMN42394159	N23-3440	Listeria monocytogenes
GCA_041764905.1	2	SAMN42394160	N24-0035	Listeria monocytogenes
GCA_041764895.1	2	SAMN42394161	N24-0248	Listeria monocytogenes
GCA_041764885.1	1	SAMN42394162	N24-0460	Listeria monocytogenes
GCA_041764875.1	2	SAMN42394163	N20-2713	Listeria monocytogenes
GCA_041763245.1	2	SAMN42394164	N21-1451	Listeria monocytogenes
GCA_041761115.1	2	SAMN42394165	N22-0700	Listeria monocytogenes
GCA_041759005.1	1	SAMN42394166	N22-0781	Listeria monocytogenes
GCA_041756895.1	1	SAMN42394167	N22-0795	Listeria monocytogenes
GCA_041755645.1	1	SAMN42394168	N22-1493	Listeria monocytogenes
GCA_041755495.1	1	SAMN42394169	N22-1696	Listeria monocytogenes
GCA_041755445.1	1	SAMN42394170	N22-1818	Listeria monocytogenes
GCA_041755435.1	1	SAMN42394171	N22-3119	Listeria monocytogenes
GCA_041755405.1	1	SAMN42394172	N22-3263	Listeria monocytogenes
GCA_041755335.1	2	SAMN42394173	N22-3358	Listeria monocytogenes
GCA_041755325.1	2	SAMN42394174	N23-0167	Listeria monocytogenes
GCA_041755315.1	1	SAMN42394175	N23-0342	Listeria monocytogenes
GCA_041755305.1	1	SAMN42394176	N23-0865	Listeria monocytogenes
GCA_041754035.1	2	SAMN42394177	N23-0921	Listeria monocytogenes
GCA_041754025.1	1	SAMN42394178	N23-0953	Listeria monocytogenes
GCA_041753985.1	2	SAMN42394179	N23-1083	Listeria monocytogenes
GCA_041753975.1	1	SAMN42394180	N23-1118	Listeria monocytogenes
GCA_041753965.1	2	SAMN42394181	N23-1699	Listeria monocytogenes
GCA_041753935.1	2	SAMN42394182	N23-1936	Listeria monocytogenes
GCA_041753845.1	1	SAMN42394183	N23-2292	Listeria monocytogenes
GCA_041753835.1	1	SAMN42394184	N23-2599	Listeria monocytogenes
GCA_041753805.1	2	SAMN42394185	N23-2879	Listeria monocytogenes
GCA_041753795.1	1	SAMN42394186	N23-2917	Listeria monocytogenes
GCA_041753785.1	2	SAMN42394187	N23-3470	Listeria monocytogenes
GCA_041753775.1	1	SAMN42394188	N23-3579	Listeria monocytogenes
GCA_041753765.1	2	SAMN42394189	N24-0020	Listeria monocytogenes
GCA_041753755.1	2	SAMN42394190	N24-0029	Listeria monocytogenes
GCA_041753745.1	2	SAMN42394191	N24-0276	Listeria monocytogenes
GCA_041753735.1	2	SAMN42394192	N24-0306	Listeria monocytogenes
GCA_041753725.1	1	SAMN42394193	N24-0333	Listeria monocytogenes

SRA Data Details

Parameter	Value
Data volume, Gbases	61
Data volume, Mbytes	35667

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Listeria monocytogenes

Oxford Nanopore versus Illumina WGS for Listeria monocytogenes genotyping

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