PAH-contaminated soil (ID 932299) - BioProject

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Accession: PRJNA932299 ID: 932299

PAH-contaminated soil

Metagenomic insights into the microbial networks of a 7,12-benz(a)anthraquinone degrading community from a PAH-contaminated soil

Through 16S rRNA amplicon metagenomic sequencing we identified a specialized benz(a)anthraquinone (BaAQ)-degrading subpopulation in a PAH-contaminated soil using sand-in-liquid microcosms. More...

Accession	PRJNA932299
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	soil metagenome[Taxonomy ID: 410658] unclassified sequences; metagenomes; ecological metagenomes; soil metagenome
Publications	Jiménez-Volkerink SN et al., "Metagenomic insights into the microbial cooperative networks of a benz(a)anthracene-7,12-dione degrading community from a creosote-contaminated soil.", Sci Total Environ, 2024 Jan 10;907:167832
Grants	"Towards a risk-based modulation of carbon fluxes involved in the biological removal of organic contaminants in soils: microbial networks." (Grant ID PID2019-109700RB-C22, Spanish Ministry of Science, Innovation and Universities) "UNLOCK project" (Grant ID NRGWI.obrug.2018.005, Dutch Research Council)
Submission	Registration date: 17-Nov-2023 University of Barcelona
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	16
SRA Experiments	10
Publications
PubMed	1
Other datasets
BioSample	25
Assembly	16

Assembly details:

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Number of Assemblies

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Contig

Total

13
3
16

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_033795405.1	JARYGS000000000	SAMN34249601	MAG11_BQ8	Achromobacter sp.
GCA_033795395.1	JARYGT000000000	SAMN34249602	MAG12_BQ8	Achromobacter sp.
GCA_033792295.1	JARYGW000000000	SAMN34249605	MAG15_BQ11	Bosea sp. (in: a-proteobacteria)
GCA_033795385.1	JARYGR000000000	SAMN34249600	MAG10_BQ13	Bradyrhizobium sp.
GCA_033795525.1	JARYGM000000000	SAMN34249595	MAG5_BQ9	Pigmentiphaga sp.
GCA_033792385.1	JARYGV000000000	SAMN34249604	MAG14_BQ5	Pseudomonas sp.
GCA_033795545.1	JARYGL000000000	SAMN34249594	MAG4_BQ4	Pseudosphingobacterium sp.
GCA_033795565.1	JARYGK000000000	SAMN34249593	MAG3_BQ3	Pusillimonas sp.
GCA_033795455.1	JARYGQ000000000	SAMN34249599	MAG9_BQ12	Shinella sp.
GCA_033795365.1	JARYGU000000000	SAMN34249603	MAG13_BQ12	Shinella sp.
GCA_033795485.1	JARYGO000000000	SAMN34249597	MAG7_BQ7	Sphingobium sp.
GCA_033795625.1	JARYGI000000000	SAMN34249591	MAG1_BQ1	Sphingobium sp.
GCA_033795445.1	JARYGP000000000	SAMN34249598	MAG8_BQ10	Sphingomonas sp.
GCA_033795505.1	JARYGN000000000	SAMN34249596	MAG6_BQ6	Stenotrophomonas sp.
GCA_033795575.1	JARYGJ000000000	SAMN34249592	MAG2_BQ2	Stenotrophomonas sp.
GCA_034285035.1	JASWJH000000000	SAMN34154901	-	soil metagenome

SRA Data Details

Parameter	Value
Data volume, Gbases	12
Data volume, Mbytes	4203

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PAH-contaminated soil

Metagenomic insights into the microbial networks of a 7,12-benz(a)anthraquinone degrading community from a PAH-contaminated soil

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