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Accession: PRJNA266093 ID: 266093

Salmonella enterica subsp. enterica serovar Typhimurium

Salmonella enterica subsp. enterica serovar Typhimurium Genome sequencing and assembly

See Genome Information for Salmonella enterica
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S. enterica ser. Typhimurium monophasic variant 1,4,[5],12:i:-, Italy 2013-2014
AccessionPRJNA266093
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismSalmonella enterica subsp. enterica serovar Typhimurium[Taxonomy ID: 90371]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica serovar Typhimurium
PublicationsOrsini M et al., "Draft Genome Sequences of 19 Salmonella enterica Serovar Typhimurium [4,5:i:-] Strains Resistant to Nalidixic Acid from a Long-Term Outbreak in Italy.", Genome Announc, 2015 Aug 20;3(4)
SubmissionRegistration date: 10-Jun-2015
IZSAM
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)291
WGS master19
SRA Experiments24
Protein Sequences71115
Publications
PubMed1
PMC1
Other datasets
BioSample24
Assembly19
Assembly details:
Assembly levelNumber of Assemblies
Contig Contig
Total
19
19
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_001038115.1ContigLFGQ00000000SAMN03162158
smonpas001102-11
Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001038105.1ContigLFGR00000000SAMN03162155
smonpas009854
Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001038085.1ContigLFGP00000000SAMN03162159
smonpas007416-3
Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001038095.1ContigLFGO00000000SAMN03162160
smonpas007416-4
Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001038165.1ContigLFGM00000000SAMN03162162
smonpas006644-5
Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001038035.1ContigLFGN00000000SAMN03162161
smonpas004260-17
Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001042425.1ContigLDPA00000000SAMN03162139
smonpas0023280
Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001027585.1ContigLECA00000000SAMN03162151
smonpas008251-3
Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001027605.1ContigLECC00000000SAMN03162156
smonpas009865-1
Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001027615.1ContigLECD00000000SAMN03162157
smonpas001102-2
Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001027595.1ContigLECB00000000SAMN03162153
smonpas008251-5
Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001026705.1ContigLDYH00000000SAMN03162140
smonpas0031082
Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001034615.1ContigLFDY00000000SAMN03162146
smonpas004260-8
Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001034605.1ContigLFDW00000000SAMN03162150
smonpas003168-1
Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001034595.1ContigLFDX00000000SAMN03162147
smonpas004260-10
Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001034585.1ContigLFDZ00000000SAMN03162145
smonpas003168-5
Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001034565.1ContigLFCG00000000SAMN03162141
smonpas001102-13
Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001034545.1ContigLFCH00000000SAMN03162144
smonpas003168-4
Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001034525.1ContigLFCI00000000SAMN03162148
smonpas004260-1
Salmonella enterica subsp. enterica serovar Typhimurium
SRA Data Details
ParameterValue
Data volume, Gbases4
Data volume, Mbytes2783

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