ID 866458 - BioProject

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Accession: PRJEB55158 ID: 866458

EMG produced TPA metagenomics assembly of PRJNA599288 data set (Cross-species colonization of Apis cerana and Apis mellifera gut bacteria).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA599288, and was assembled with metaSPAdes v3. More...

Accession	PRJEB55158
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 5-Aug-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1698
WGS master	42
Publications
PubMed	1
PMC	1
Other datasets
BioSample	42
Assembly	42

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

42
42

Assembly	WGS	BioSample	Taxonomy
GCA_946477945.1	CAMKZX000000000	SAMEA110697493	Apibacter mensalis
GCA_946477315.1	CAMKXQ000000000	SAMEA110697456	Bartonella apis
GCA_946478075.1	CAMLAR000000000	SAMEA110697485	Bifidobacterium indicum
GCA_946477145.1	CAMKWL000000000	SAMEA110697474	Bombella intestini
GCA_946477445.1	CAMKYH000000000	SAMEA110697467	Frischella perrara
GCA_946478435.1	CAMLBW000000000	SAMEA110697491	Frischella perrara
GCA_946477545.1	CAMKYK000000000	SAMEA110697481	Fructobacillus fructosus
GCA_946476815.1	CAMKVV000000000	SAMEA110697472	Gilliamella apicola
GCA_946477155.1	CAMKXB000000000	SAMEA110697462	Gilliamella apicola
GCA_946477885.1	CAMLAB000000000	SAMEA110697459	Gilliamella apicola
GCA_946476775.1	CAMKVW000000000	SAMEA110697464	Gilliamella apicola
GCA_946478265.1	CAMLBI000000000	SAMEA110697482	Lactobacillus apis
GCA_946477525.1	CAMKYR000000000	SAMEA110697484	Lactobacillus helsingborgensis
GCA_946476935.1	CAMKWH000000000	SAMEA110697460	Lactobacillus panisapium
GCA_946477175.1	CAMKWO000000000	SAMEA110697466	Parasaccharibacter apium
GCA_946476785.1	CAMKVT000000000	SAMEA110697452	Parasaccharibacter apium
GCA_946477515.1	CAMKYO000000000	SAMEA110697488	Parasaccharibacter apium
GCA_946476885.1	CAMKWC000000000	SAMEA110697461	Snodgrassella alvi
GCA_946477485.1	CAMKYL000000000	SAMEA110697468	Snodgrassella alvi
GCA_946476855.1	CAMKVZ000000000	SAMEA110697454	uncultured Acetobacteraceae bacterium
GCA_946477025.1	CAMKWR000000000	SAMEA110697477	uncultured Acetobacteraceae bacterium
GCA_946476985.1	CAMKWS000000000	SAMEA110697463	uncultured Acetobacteraceae bacterium
GCA_946477305.1	CAMKXO000000000	SAMEA110697458	uncultured Acetobacteraceae bacterium
GCA_946477865.1	CAMKZV000000000	SAMEA110697453	uncultured Bartonella sp.
GCA_946477015.1	CAMKWN000000000	SAMEA110697478	uncultured Bartonella sp.
GCA_946478285.1	CAMLBN000000000	SAMEA110697457	uncultured Bifidobacterium sp.
GCA_946477495.1	CAMKYN000000000	SAMEA110697476	uncultured Bifidobacterium sp.
GCA_946476825.1	CAMKVP000000000	SAMEA110697469	uncultured Commensalibacter sp.
GCA_946477075.1	CAMKWQ000000000	SAMEA110697471	uncultured Commensalibacter sp.
GCA_946477135.1	CAMKWM000000000	SAMEA110697486	uncultured Fructobacillus sp.
GCA_946478345.1	CAMLBU000000000	SAMEA110697487	uncultured Gilliamella sp.
GCA_946477035.1	CAMKXF000000000	SAMEA110697483	uncultured Gilliamella sp.
GCA_946476805.1	CAMKVR000000000	SAMEA110697475	uncultured Gilliamella sp.
GCA_946477995.1	CAMLAI000000000	SAMEA110697490	uncultured Gilliamella sp.
GCA_946477565.1	CAMKYZ000000000	SAMEA110697492	uncultured Gilliamella sp.
GCA_946478315.1	CAMLBJ000000000	SAMEA110697480	uncultured Lactobacillus sp.
GCA_946478355.1	CAMLBQ000000000	SAMEA110697470	uncultured Lactobacillus sp.
GCA_946477065.1	CAMKWT000000000	SAMEA110697479	uncultured Lactobacillus sp.
GCA_946477085.1	CAMKXA000000000	SAMEA110697473	uncultured Lactobacillus sp.
GCA_946477475.1	CAMKYM000000000	SAMEA110697465	uncultured Lactobacillus sp.
GCA_946477535.1	CAMKYQ000000000	SAMEA110697489	uncultured Neisseriaceae bacterium
GCA_946476835.1	CAMKWA000000000	SAMEA110697455	uncultured Neokomagataea sp.

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EMG produced TPA metagenomics assembly of PRJNA599288 data set (Cross-species colonization of Apis cerana and Apis mellifera gut bacteria).

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