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Accession: PRJNA853369 ID: 853369

Context-dependent genetic effects on gene expression (human)

See Genome Information for Homo sapiens
We profiled genome-wide gene expression levels across 12 cellular environments using 544 immortalized B cell (lymphoblastoid) lines from the 1000 Genomes Project. Overall design: mRNA-seq of RNA extracted from lymphoblastoid cell lines
AccessionPRJNA853369; GEO: GSE207049
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
PublicationsLea AJ et al., "Diverse environmental perturbations reveal the evolution and context-dependency of genetic effects on gene expression levels.", Genome Res, 2022 Oct;32(10):1826-1839
SubmissionRegistration date: 27-Jun-2022
Vanderbilt University
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments7280
Publications
PubMed1
PMC1
Other datasets
BioSample7377
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes208
SRA Data Details
ParameterValue
Data volume, Gbases1,955
Data volume, Tbytes0.64

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