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Accession: PRJEB49201 ID: 786194

Real-time metagenomics-based diagnosis of community-acquired meningitis: a prospective series, Southern France.

Current Point-Of-Care diagnosis of community-acquired meningitis allowed to identify presence/ absence of the pathogen genome in the CSF. More...
AccessionPRJEB49201
Data TypeGenome sequencing and assembly
ScopeMonoisolate
SubmissionRegistration date: 4-Dec-2021
IHU - Mediterranee Infection
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)5541
WGS master30
Genomic DNA1
Other datasets
BioSample31
Assembly27
Assembly details:
Assembly levelNumber of Assemblies
12
15
27
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_923172715.1ContigCAKLQV000000000SAMEA10833639
HIN-27
GCA_923174065.1ContigCAKLQZ000000000SAMEA10833637
HIN-25
GCA_923172585.1ScaffoldCAKLQQ000000000SAMEA10833646
HI-5290
GCA_923173765.1ContigCAKLQX000000000SAMEA10833647
HI-7665
GCA_923172345.1ContigCAKLQN000000000SAMEA10833621
HIN-7
GCA_923187015.1ScaffoldCAKLRJ000000000SAMEA10833632
HIN-18
GCA_923172565.1ContigCAKLQS000000000SAMEA10833619
LMN-5
GCA_923174355.1ContigCAKLRB000000000SAMEA10833640
LMN-28
GCA_923187405.1ScaffoldCAKLRL000000000SAMEA10833654
NM-4859
GCA_923184405.1ScaffoldCAKLRD000000000SAMEA10833651
NM-1853
GCA_923172605.1ContigCAKLQR000000000SAMEA10833622
NMN-8
GCA_923174315.1ContigCAKLRA000000000SAMEA10833644
NM-0534
GCA_923172355.1ContigCAKLQO000000000SAMEA10833628
NMN-14
GCA_923172645.1ContigCAKLQU000000000SAMEA10833645
NM-1495
GCA_923173235.1ScaffoldCAKLQW000000000SAMEA10833649
SA-9397
GCA_923256795.1ScaffoldCAKLRM000000000SAMEA10833615
SPN-1
GCA_923186255.1ScaffoldCAKLRF000000000SAMEA10833655
SP-0440
GCA_923186265.1ScaffoldCAKLRG000000000SAMEA10833656
SP-8632
GCA_923186865.1ScaffoldCAKLRI000000000SAMEA10833657
SP-1725
GCA_923186635.1ScaffoldCAKLRH000000000SAMEA10833661
SP-8159
GCA_923186305.1ContigCAKLRE000000000SAMEA10833653
SP-1343
GCA_923187375.1ContigCAKLRK000000000SAMEA10833659
SP-5439
GCA_923172285.1ScaffoldCAKLQI000000000SAMEA10833650
SP-0631
GCA_923172325.1ContigCAKLQL000000000SAMEA10833642
SP7826
GCA_923172305.1ContigCAKLQJ000000000SAMEA10833638
SPN-26
GCA_923172295.1ScaffoldCAKLQK000000000SAMEA10833631
SPN-17
GCA_923172635.1ContigCAKLQT000000000SAMEA10833618
SPN-4

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