soil metagenome (ID 767176) - BioProject

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Accession: PRJNA767176 ID: 767176

soil metagenome

Metagenomics and culturomics reveal prevalence of truncated denitrification pathways in agricultural subsoil

vadose soil

Accession	PRJNA767176
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	soil metagenome[Taxonomy ID: 410658] unclassified sequences; metagenomes; ecological metagenomes; soil metagenome
Submission	Registration date: 16-Feb-2024 Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	104
Other datasets
BioSample	104
Assembly	104

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

104
104

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_036675575.1	JAKFET000000000	SAMN21891926	LC080	Acidimicrobiaceae bacterium
GCA_036675905.1	JAKFEA000000000	SAMN21891907	LC061	Acidovorax sp.
GCA_036675945.1	JAKFDX000000000	SAMN21891904	LC058	Acinetobacter johnsonii
GCA_036675425.1	JAKFFB000000000	SAMN21891934	LC088	Actinomycetales bacterium
GCA_036675695.1	JAKFEL000000000	SAMN21891918	LC072	Aeromicrobium sp.
GCA_036676545.1	JAKFCR000000000	SAMN21891872	LC026	Aeromicrobium sp.
GCA_036676885.1	JAKFCB000000000	SAMN21891856	LC010	Aeromicrobium sp.
GCA_036677145.1	JAKFFF000000000	SAMN21891938	LC093	Alcaligenaceae bacterium
GCA_036676605.1	JAKFCO000000000	SAMN21891869	LC023	Algoriphagus sp.
GCA_036676095.1	JAKFDP000000000	SAMN21891896	LC050	Anaerobacillus sp.
GCA_036676335.1	JAKFDD000000000	SAMN21891884	LC038	Arenimonas sp.
GCA_036676665.1	JAKFCL000000000	SAMN21891866	LC020	Arenimonas sp.
GCA_036675785.1	JAKFEF000000000	SAMN21891912	LC066	Aromatoleum sp.
GCA_036676015.1	JAKFDT000000000	SAMN21891900	LC054	Arthrobacter sp.
GCA_036677265.1	JAKFDC000000000	SAMN21891883	LC037	Arthrobacter sp.
GCA_036675045.1	JAKFFP000000000	SAMN21891948	LC103	Bacteriovoracales bacterium
GCA_036676295.1	JAKFDE000000000	SAMN21891885	LC039	Bacteroidia bacterium
GCA_036676705.1	JAKFCJ000000000	SAMN21891864	LC018	Bacteroidota bacterium
GCA_036675075.1	JAKFFM000000000	SAMN21891945	LC100	Bacteroidota bacterium
GCA_036676525.1	JAKFCS000000000	SAMN21891873	LC027	Bdellovibrio bacteriovorus
GCA_036677065.1	JAKFBS000000000	SAMN21891847	LC001	Bdellovibrio sp.
GCA_036676395.1	JAKFCY000000000	SAMN21891879	LC033	Bdellovibrio sp.
GCA_036675845.1	JAKFED000000000	SAMN21891910	LC064	Bosea sp. (in: a-proteobacteria)
GCA_036676925.1	JAKFCA000000000	SAMN21891855	LC009	Bosea sp. (in: a-proteobacteria)
GCA_036676315.1	JAKFDB000000000	SAMN21891882	LC036	Bradyrhizobiaceae bacterium
GCA_036676475.1	JAKFCU000000000	SAMN21891875	LC029	Brevibacillus sp.
GCA_036676155.1	JAKFDM000000000	SAMN21891893	LC047	Brevundimonas sp.
GCA_036676055.1	JAKFDS000000000	SAMN21891899	LC053	Brevundimonas sp.
GCA_036675805.1	JAKFEH000000000	SAMN21891914	LC068	Brevundimonas sp.
GCA_036677305.1	JAKFEB000000000	SAMN21891908	LC062	Brevundimonas sp.
GCA_036675585.1	JAKFES000000000	SAMN21891925	LC079	Burkholderiaceae bacterium
GCA_036676495.1	JAKFCT000000000	SAMN21891874	LC028	Candidatus Sericytochromatia bacterium
GCA_036676985.1	JAKFBU000000000	SAMN21891849	LC003	Candidatus Sericytochromatia bacterium
GCA_036675505.1	JAKFEW000000000	SAMN21891929	LC083	Candidatus Sericytochromatia bacterium
GCA_036676455.1	JAKFCW000000000	SAMN21891877	LC031	Candidatus Sericytochromatia bacterium
GCA_036675025.1	JAKFFN000000000	SAMN21891946	LC101	Candidatus Sumerlaeales bacterium
GCA_036676415.1	JAKFCX000000000	SAMN21891878	LC032	Chitinophagaceae bacterium
GCA_036675995.1	JAKFDV000000000	SAMN21891902	LC056	Chitinophagaceae bacterium
GCA_036675565.1	JAKFER000000000	SAMN21891924	LC078	Chitinophagaceae bacterium
GCA_036675745.1	JAKFEJ000000000	SAMN21891916	LC070	Chitinophagaceae bacterium
GCA_036676905.1	JAKFCE000000000	SAMN21891859	LC013	Chitinophagaceae bacterium
GCA_036676745.1	JAKFCF000000000	SAMN21891860	LC014	Chitinophagaceae bacterium
GCA_036676725.1	JAKFCI000000000	SAMN21891863	LC017	Chitinophagaceae bacterium
GCA_036676685.1	JAKFCK000000000	SAMN21891865	LC019	Chitinophagaceae bacterium
GCA_036676195.1	JAKFDK000000000	SAMN21891891	LC045	Clostridia bacterium
GCA_036676765.1	JAKFCH000000000	SAMN21891862	LC016	Deltaproteobacteria bacterium
GCA_036676215.1	JAKFDJ000000000	SAMN21891890	LC044	Devosia sp.
GCA_036675975.1	JAKFDU000000000	SAMN21891901	LC055	Devosia sp.
GCA_036675525.1	JAKFEU000000000	SAMN21891927	LC081	Devosia sp.
GCA_036676805.1	JAKFCD000000000	SAMN21891858	LC012	Elusimicrobiota bacterium
GCA_036677195.1	JAKFEX000000000	SAMN21891930	LC084	Flavihumibacter sp.
GCA_036675925.1	JAKFDZ000000000	SAMN21891906	LC060	Flavihumibacter sp.
GCA_036676075.1	JAKFDQ000000000	SAMN21891897	LC051	Flavihumibacter sp.
GCA_036676965.1	JAKFBW000000000	SAMN21891851	LC005	Flavobacterium sp.
GCA_036675455.1	JAKFFA000000000	SAMN21891933	LC087	Gemmatimonadaceae bacterium
GCA_036676795.1	JAKFCC000000000	SAMN21891857	LC011	Gemmatimonadota bacterium
GCA_036677105.1	JAKFBR000000000	SAMN21891846	LC090	Hydrogenophaga sp.
GCA_036675665.1	JAKFEO000000000	SAMN21891921	LC075	Hydrogenophaga sp.
GCA_036677225.1	JAKFEG000000000	SAMN21891913	LC067	Hydrogenophaga taeniospiralis
GCA_036675885.1	JAKFDY000000000	SAMN21891905	LC059	Lacibacter sp.
GCA_036675265.1	JAKFFJ000000000	SAMN21891942	LC097	Luteimonas sp.
GCA_036676625.1	JAKFCN000000000	SAMN21891868	LC022	Lysobacter sp.
GCA_036676275.1	JAKFDF000000000	SAMN21891886	LC040	Lysobacter sp.
GCA_036676945.1	JAKFBZ000000000	SAMN21891854	LC008	Marmoricola sp.
GCA_036676245.1	JAKFDH000000000	SAMN21891888	LC042	Massilia sp.
GCA_036675865.1	JAKFEC000000000	SAMN21891909	LC063	Methylotenera sp.
GCA_036676175.1	JAKFDL000000000	SAMN21891892	LC046	Methylotenera sp.
GCA_036676375.1	JAKFCZ000000000	SAMN21891880	LC034	Methylotenera sp.
GCA_036675645.1	JAKFEP000000000	SAMN21891922	LC076	Methylotenera sp.
GCA_036675345.1	JAKFFE000000000	SAMN21891937	LC092	Myxococcaceae bacterium
GCA_036676355.1	JAKFDA000000000	SAMN21891881	LC035	Nitrosomonadales bacterium
GCA_036675765.1	JAKFEI000000000	SAMN21891915	LC069	Nocardioides sp.
GCA_036675625.1	JAKFEQ000000000	SAMN21891923	LC077	Opitutaceae bacterium
GCA_036675955.1	JAKFDW000000000	SAMN21891903	LC057	Orrella sp.
GCA_036675035.1	JAKFFO000000000	SAMN21891947	LC102	Oxalobacteraceae bacterium
GCA_036675285.1	JAKFFK000000000	SAMN21891943	LC098	Paucimonas sp.
GCA_036677325.1	JAKFBY000000000	SAMN21891853	LC007	Paucimonas sp.
GCA_036677005.1	JAKFBV000000000	SAMN21891850	LC004	Pedobacter sp.
GCA_036676565.1	JAKFCP000000000	SAMN21891870	LC024	Pedobacter sp.
GCA_036676435.1	JAKFCV000000000	SAMN21891876	LC030	Pedobacter sp.
GCA_036677185.1	JAKFEN000000000	SAMN21891920	LC074	Phenylobacterium sp.
GCA_036676115.1	JAKFDO000000000	SAMN21891895	LC049	Phenylobacterium sp.
GCA_036676035.1	JAKFDR000000000	SAMN21891898	LC052	Polaromonas sp.
GCA_036675725.1	JAKFEK000000000	SAMN21891917	LC071	Polaromonas sp.
GCA_036677085.1	JAKFFI000000000	SAMN21891941	LC096	Porticoccaceae bacterium
GCA_036675385.1	JAKFFD000000000	SAMN21891936	LC091	Pseudarthrobacter sp.
GCA_036677165.1	JAKFFH000000000	SAMN21891940	LC095	Pseudomonas benzenivorans
GCA_036676135.1	JAKFDN000000000	SAMN21891894	LC048	Pseudomonas hunanensis
GCA_036675275.1	JAKFFG000000000	SAMN21891939	LC094	Pseudomonas sp.
GCA_036675405.1	JAKFFC000000000	SAMN21891935	LC089	Pseudomonas sp.
GCA_036677025.1	JAKFBX000000000	SAMN21891852	LC006	Pseudomonas sp.
GCA_036677285.1	JAKFDG000000000	SAMN21891887	LC041	Pseudoxanthomonas sp.
GCA_036677045.1	JAKFBT000000000	SAMN21891848	LC002	Ramlibacter sp.
GCA_036676645.1	JAKFCM000000000	SAMN21891867	LC021	Ramlibacter sp.
GCA_036675435.1	JAKFEZ000000000	SAMN21891932	LC086	Ramlibacter sp.
GCA_036676235.1	JAKFDI000000000	SAMN21891889	LC043	Rhizobacter sp.
GCA_036675055.1	JAKFFQ000000000	SAMN21891949	LC104	Rhodococcus qingshengii
GCA_036675815.1	JAKFEE000000000	SAMN21891911	LC065	Rhodospirillaceae bacterium
GCA_036676585.1	JAKFCQ000000000	SAMN21891871	LC025	Robertmurraya sp.
GCA_036677245.1	JAKFCG000000000	SAMN21891861	LC015	Sphingomonas sp.
GCA_036675225.1	JAKFFL000000000	SAMN21891944	LC099	Sphingomonas sp.
GCA_036675685.1	JAKFEM000000000	SAMN21891919	LC073	Sphingopyxis sp.
GCA_036675545.1	JAKFEV000000000	SAMN21891928	LC082	Stutzerimonas kunmingensis
GCA_036675475.1	JAKFEY000000000	SAMN21891931	LC085	Vicinamibacterales bacterium

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soil metagenome

Metagenomics and culturomics reveal prevalence of truncated denitrification pathways in agricultural subsoil

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