ID 764197 - BioProject

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Accession: PRJNA764197 ID: 764197

Comammox Nitrospira bacteria dominate canonical nitrifiers irrespective of electron donor mode and availability

In this study, microcosms-based experiments were used to investigate the impact of electron donor type (i. More...

Accession	PRJNA764197
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Vilardi KJ et al., "Comammox Nitrospira bacteria outnumber canonical nitrifiers irrespective of electron donor mode and availability in biofiltration systems.", FEMS Microbiol Ecol, 2022 Apr 21;98(4)
Submission	Registration date: 17-Sep-2021 Northeastern University
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	169
Publications
PubMed	1
Other datasets
BioSample	169
Assembly	169

Assembly details:

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Assembly level

Number of Assemblies

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Contig

Total

161
8
169

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_022842185.1	JALHQB000000000	SAMN21474391	bin.6	Acetobacteraceae bacterium
GCA_022842985.1	JALHON000000000	SAMN21474351	bin.151	Acidobacteriota bacterium
GCA_022844355.1	JALHLW000000000	SAMN21474282	Bin_25_2_1	Acidovorax sp.
GCA_022841525.1	JALHRI000000000	SAMN21474424	maxbin.121_sub	Alphaproteobacteria bacterium
GCA_022841825.1	JALHQT000000000	SAMN21474409	maxbin.031	Anaerolineae bacterium
GCA_022841935.1	JALHQQ000000000	SAMN21474406	bin.94_sub	Anaerolineae bacterium
GCA_022842885.1	JALHOR000000000	SAMN21474355	bin.171_sub	Anaerolineae bacterium
GCA_022842735.1	JALHOY000000000	SAMN21474362	bin.19_sub	Anaerolineae bacterium
GCA_022843745.1	JALHNB000000000	SAMN21474313	Bin_50_3	Anaerolineae bacterium
GCA_022843385.1	JALHNT000000000	SAMN21474331	Bin_70_1	Anaerolineae bacterium
GCA_022841885.1	JALHQP000000000	SAMN21474405	bin.92	Aquincola sp.
GCA_022843845.1	JALHMW000000000	SAMN21474308	Bin_47_5	Archangium sp.
GCA_022842045.1	JALHQI000000000	SAMN21474398	bin.78_sub	Arenimonas sp.
GCA_022841465.1	JALHRL000000000	SAMN21474427	maxbin.150	Bacteroidia bacterium
GCA_022842625.1	JALHPG000000000	SAMN21474370	bin.223_sub	Bacteroidia bacterium
GCA_022841545.1	JALHRF000000000	SAMN21474421	maxbin.096_sub	Bauldia sp.
GCA_022842925.1	JALHOQ000000000	SAMN21474354	bin.161	Bdellovibrionales bacterium
GCA_022841845.1	JALHQS000000000	SAMN21474408	maxbin.021_sub	Bosea sp. (in: a-proteobacteria)
GCA_022843365.1	JALHNU000000000	SAMN21474332	Bin_71_2	Bradyrhizobium sp.
GCA_022844465.1	JALHLP000000000	SAMN21474275	Bin_23_1	Bradyrhizobium sp.
GCA_022843625.1	JALHNH000000000	SAMN21474319	Bin_54_2	Bryobacter sp.
GCA_022843605.1	JALHNI000000000	SAMN21474320	Bin_55_1_sub	Bryobacter sp.
GCA_022842005.1	JALHQK000000000	SAMN21474400	bin.84_sub	Bryobacteraceae bacterium
GCA_022843955.1	JALHMQ000000000	SAMN21474302	Bin_34_1_sub	Burkholderiaceae bacterium
GCA_022843925.1	JALHMS000000000	SAMN21474304	Bin_40_2	Burkholderiales bacterium
GCA_022844545.1	JALHLN000000000	SAMN21474273	Bin_20_2	Burkholderiales bacterium
GCA_022842425.1	JALHPP000000000	SAMN21474379	bin.264_sub	Burkholderiales bacterium
GCA_022841915.1	JALHQN000000000	SAMN21474403	bin.9	Burkholderiales bacterium
GCA_022841375.1	JALHRQ000000000	SAMN21474432	maxbin.188	Burkholderiales bacterium
GCA_022843705.1	JALHND000000000	SAMN21474315	Bin_52_4	Burkholderiales bacterium
GCA_022843725.1	JALHNC000000000	SAMN21474314	Bin_52_2	Burkholderiales bacterium
GCA_022842065.1	JALHQH000000000	SAMN21474397	bin.77	Caldilineaceae bacterium
GCA_022842405.1	JALHPQ000000000	SAMN21474380	bin.265	Candidatus Doudnabacteria bacterium
GCA_022842685.1	JALHPC000000000	SAMN21474366	bin.207	Candidatus Kapaibacterium sp.
GCA_022842585.1	JALHPI000000000	SAMN21474372	bin.228	Candidatus Paceibacterota bacterium
GCA_022842945.1	JALHOO000000000	SAMN21474352	bin.152	Candidatus Paceibacterota bacterium
GCA_022843685.1	JALHNE000000000	SAMN21474316	Bin_53_1_sub	Candidatus Paceibacterota bacterium
GCA_022843645.1	JALHNF000000000	SAMN21474317	Bin_53_2_2	Candidatus Paceibacterota bacterium
GCA_022843285.1	JALHNY000000000	SAMN21474336	Bin_78_2_sub	Candidatus Paceibacterota bacterium
GCA_022842645.1	JALHPE000000000	SAMN21474368	bin.22	Candidatus Paceibacterota bacterium
GCA_022841985.1	JALHQL000000000	SAMN21474401	bin.85	Candidatus Paceibacterota bacterium
GCA_022841645.1	JALHRC000000000	SAMN21474418	maxbin.077	Candidatus Paceibacterota bacterium
GCA_022844065.1	JALHML000000000	SAMN21474297	Bin_32_2_1	Candidatus Paceibacterota bacterium
GCA_022843885.1	JALHMU000000000	SAMN21474306	Bin_43_2_2_sub	Candidatus Peribacteraceae bacterium
GCA_022841445.1	JALHRM000000000	SAMN21474428	maxbin.159	Candidatus Saccharibacteria bacterium
GCA_022842995.1	JALHOM000000000	SAMN21474350	bin.149_sub	Candidatus Saccharibacteria bacterium
GCA_022843585.1	JALHNJ000000000	SAMN21474321	Bin_56_5	Chitinophagaceae bacterium
GCA_022841365.1	JALHRP000000000	SAMN21474431	maxbin.180	Chitinophagaceae bacterium
GCA_022843065.1	JALHOK000000000	SAMN21474348	bin.137_sub	Chitinophagales bacterium
GCA_022842705.1	JALHPB000000000	SAMN21474365	bin.206_sub	Chloroflexota bacterium
GCA_022842845.1	JALHOT000000000	SAMN21474357	bin.177	Cyclobacteriaceae bacterium
GCA_022841475.1	JALHRJ000000000	SAMN21474425	maxbin.123_sub	Cyclobacteriaceae bacterium
GCA_022841605.1	JALHRG000000000	SAMN21474422	maxbin.105_sub	Deltaproteobacteria bacterium
GCA_022843175.1	JALHOE000000000	SAMN21474342	bin.11	Deltaproteobacteria bacterium
GCA_022844085.1	JALHMK000000000	SAMN21474296	Bin_31_1	Deltaproteobacteria bacterium
GCA_022842375.1	JALHPR000000000	SAMN21474381	bin.267	Elioraea sp.
GCA_022841305.1	JALHRT000000000	SAMN21474435	maxbin.277_sub	Ferruginibacter sp.
GCA_022841795.1	JALHQU000000000	SAMN21474410	maxbin.043	Fimbriiglobus sp.
GCA_022842565.1	JALHPH000000000	SAMN21474371	bin.224_sub	Fimbriimonadaceae bacterium
GCA_022843485.1	JALHNM000000000	SAMN21474324	Bin_61_3	Fimbriimonadaceae bacterium
GCA_022843805.1	JALHMY000000000	SAMN21474310	Bin_49_1	Fuerstiella sp.
GCA_022843415.1	JALHNP000000000	SAMN21474327	Bin_66_3	Gammaproteobacteria bacterium
GCA_022842345.1	JALHPT000000000	SAMN21474383	bin.272	Gammaproteobacteria bacterium
GCA_022843445.1	JALHNS000000000	SAMN21474330	Bin_69_sub	Gemmata sp.
GCA_022842245.1	JALHPZ000000000	SAMN21474389	bin.39_sub	Gemmataceae bacterium
GCA_022841405.1	JALHRO000000000	SAMN21474430	maxbin.174_sub	Gemmatimonadaceae bacterium
GCA_022843205.1	JALHOA000000000	SAMN21474338	Bin_9_1_2_sub	Gemmatimonadaceae bacterium
GCA_022843265.1	JALHNZ000000000	SAMN21474337	Bin_80_sub	Gemmatimonadaceae bacterium
GCA_022843235.1	JALHOB000000000	SAMN21474339	Bin_9_4_sub	Gemmatimonadaceae bacterium
GCA_022844385.1	JALHLX000000000	SAMN21474283	Bin_25_3	Hydrogenophaga sp.
GCA_022844325.1	JALHLY000000000	SAMN21474284	Bin_25_4	Hydrogenophaga sp.
GCA_022844275.1	JALHMB000000000	SAMN21474287	Bin_29_2	Hyphomicrobiaceae bacterium
GCA_022844245.1	JALHMD000000000	SAMN21474289	Bin_29_6	Hyphomicrobiaceae bacterium
GCA_022844225.1	JALHMC000000000	SAMN21474288	Bin_29_3	Hyphomicrobiaceae bacterium
GCA_022844185.1	JALHME000000000	SAMN21474290	Bin_29_8	Hyphomicrobiaceae bacterium
GCA_022842785.1	JALHOW000000000	SAMN21474360	bin.191	Hyphomicrobiaceae bacterium
GCA_022842205.1	JALHQA000000000	SAMN21474390	bin.53	Hyphomicrobiales bacterium
GCA_022844425.1	JALHLT000000000	SAMN21474279	Bin_23_6	Hyphomicrobiales bacterium
GCA_022844105.1	JALHMJ000000000	SAMN21474295	Bin_30_7	Hyphomicrobium sp.
GCA_022841965.1	JALHQM000000000	SAMN21474402	bin.89	Hyphomicrobium sp.
GCA_022841785.1	JALHQV000000000	SAMN21474411	maxbin.048	Hyphomicrobium sp.
GCA_022843145.1	JALHOF000000000	SAMN21474343	bin.114	Hyphomicrobium sp.
GCA_022843225.1	JALHOC000000000	SAMN21474340	bin.100_sub	Hyphomonadaceae bacterium
GCA_022841905.1	JALHQO000000000	SAMN21474404	bin.91	Hyphomonadaceae bacterium
GCA_022844475.1	JALHLR000000000	SAMN21474277	Bin_23_2_sub	Hyphomonadaceae bacterium
GCA_022844345.1	JALHLU000000000	SAMN21474280	Bin_23_7	Hyphomonadaceae bacterium
GCA_022844445.1	JALHLS000000000	SAMN21474278	Bin_23_5	Hyphomonas sp.
GCA_022842665.1	JALHPD000000000	SAMN21474367	bin.216	Hyphomonas sp.
GCA_022843125.1	JALHOG000000000	SAMN21474344	bin.116	Ilumatobacteraceae bacterium
GCA_022842285.1	JALHPV000000000	SAMN21474385	bin.28	Kofleriaceae bacterium
GCA_022842525.1	JALHPM000000000	SAMN21474376	bin.254	Luteitalea sp.
GCA_022841325.1	JALHRS000000000	SAMN21474434	maxbin.218_sub	Lysobacterales bacterium
GCA_022844135.1	JALHMG000000000	SAMN21474292	Bin_30_3_3	Lysobacterales bacterium
GCA_022844165.1	JALHMH000000000	SAMN21474293	Bin_30_4_2	Lysobacterales bacterium
GCA_022843405.1	JALHNQ000000000	SAMN21474328	Bin_68_1	Methylocystis sp.
GCA_022843525.1	JALHNR000000000	SAMN21474329	Bin_68_2_sub	Methylocystis sp.
GCA_022841565.1	JALHRH000000000	SAMN21474423	maxbin.118	Mycobacterium sp.
GCA_022842905.1	JALHOS000000000	SAMN21474356	bin.172	Myxococcaceae bacterium
GCA_022842935.1	JALHOP000000000	SAMN21474353	bin.157	Myxococcota bacterium
GCA_022842015.1	JALHQJ000000000	SAMN21474399	bin.83	Nitrosomonas sp.
GCA_022841425.1	JALHRN000000000	SAMN21474429	maxbin.168	Nitrosomonas ureae
GCA_022842445.1	JALHPO000000000	SAMN21474378	bin.260	Nitrospira sp.
GCA_022843785.1	JALHMZ000000000	SAMN21474311	Bin_49_2_2	Nitrospira sp.
GCA_022843765.1	JALHNA000000000	SAMN21474312	Bin_49_4	Nitrospira sp.
GCA_022841725.1	JALHQY000000000	SAMN21474414	maxbin.060	Parachlamydiales bacterium
GCA_022843025.1	JALHOL000000000	SAMN21474349	bin.139	Paracoccaceae bacterium
GCA_022843095.1	JALHOH000000000	SAMN21474345	bin.120	Patescibacteria group bacterium
GCA_022843855.1	JALHMV000000000	SAMN21474307	Bin_44_4_sub	Patescibacteria group bacterium
GCA_022842085.1	JALHQF000000000	SAMN21474395	bin.69	Patescibacteria group bacterium
GCA_022843985.1	JALHMP000000000	SAMN21474301	Bin_33_7	Phreatobacter sp.
GCA_022842805.1	JALHOX000000000	SAMN21474361	bin.198_sub	Phycisphaerae bacterium
GCA_022843045.1	JALHOJ000000000	SAMN21474347	bin.134_sub	Phycisphaerales bacterium
GCA_022843565.1	JALHNK000000000	SAMN21474322	Bin_57_2_2_sub	Phycisphaerales bacterium
GCA_022843545.1	JALHNL000000000	SAMN21474323	Bin_61_1	Phycisphaerales bacterium
GCA_022842745.1	JALHPA000000000	SAMN21474364	bin.204_sub	Pirellulales bacterium
GCA_022841705.1	JALHQZ000000000	SAMN21474415	maxbin.065	Pirellulales bacterium
GCA_022844125.1	JALHMI000000000	SAMN21474294	Bin_30_5	Pirellulales bacterium
GCA_022844585.1	JALHLM000000000	SAMN21474272	Bin_18_1_sub	Pirellulales bacterium
GCA_022841245.1	JALHRW000000000	SAMN21474438	maxbin.317	Planctomycetota bacterium
GCA_022842465.1	JALHPN000000000	SAMN21474377	bin.255	Polyangiaceae bacterium
GCA_022843825.1	JALHMX000000000	SAMN21474309	Bin_48_1	Pseudobdellovibrionaceae bacterium
GCA_022843085.1	JALHOI000000000	SAMN21474346	bin.126_sub	Pseudobdellovibrionaceae bacterium
GCA_022843665.1	JALHNG000000000	SAMN21474318	Bin_53_4_sub	Pseudobdellovibrionaceae bacterium
GCA_022843325.1	JALHNV000000000	SAMN21474333	Bin_72_2	Pseudolabrys sp.
GCA_022842105.1	JALHQE000000000	SAMN21474394	bin.67_sub	Pseudolabrys sp.
GCA_022841665.1	JALHRB000000000	SAMN21474417	maxbin.076_sub	Pseudolabrys sp.
GCA_022843465.1	JALHNO000000000	SAMN21474326	Bin_66_1	Pseudomonadota bacterium
GCA_022843165.1	JALHOD000000000	SAMN21474341	bin.109	Pseudorhodoplanes sp.
GCA_022843305.1	JALHNX000000000	SAMN21474335	Bin_76_1	Pyrinomonadaceae bacterium
GCA_022841755.1	JALHQX000000000	SAMN21474413	maxbin.058_sub	Pyrinomonadaceae bacterium
GCA_022841865.1	JALHQR000000000	SAMN21474407	maxbin.001	Pyrinomonadaceae bacterium
GCA_022844525.1	JALHLO000000000	SAMN21474274	Bin_20_3_2	Ramlibacter sp.
GCA_022844015.1	JALHMO000000000	SAMN21474300	Bin_33_5_sub	Reyranella sp.
GCA_022844045.1	JALHMM000000000	SAMN21474298	Bin_33_2_sub	Reyranellaceae bacterium
GCA_022842495.1	JALHPK000000000	SAMN21474374	bin.234_sub	Rhodocyclaceae bacterium
GCA_022843945.1	JALHMR000000000	SAMN21474303	Bin_39_2_2	Rhodospirillaceae bacterium
GCA_022843345.1	JALHNW000000000	SAMN21474334	Bin_74	Rubritepida sp.
GCA_022842825.1	JALHOU000000000	SAMN21474358	bin.178	Rubrivivax sp.
GCA_022842595.1	JALHPF000000000	SAMN21474369	bin.222	Rubrivivax sp.
GCA_022842305.1	JALHPY000000000	SAMN21474388	bin.38	Rubrivivax sp.
GCA_022843905.1	JALHMT000000000	SAMN21474305	Bin_42_5_sub	Rubrivivax sp.
GCA_022844565.1	JALHLK000000000	SAMN21474270	Bin_11_1	Saprospiraceae bacterium
GCA_022844265.1	JALHMA000000000	SAMN21474286	Bin_28_2_sub	Saprospiraceae bacterium
GCA_022842255.1	JALHPW000000000	SAMN21474386	bin.285_sub	Saprospiraceae bacterium
GCA_022841745.1	JALHQW000000000	SAMN21474412	maxbin.051	Saprospiraceae bacterium
GCA_022841505.1	JALHRK000000000	SAMN21474426	maxbin.128_sub	Saprospiraceae bacterium
GCA_022841345.1	JALHRR000000000	SAMN21474433	maxbin.211	Saprospiraceae bacterium
GCA_022842725.1	JALHOZ000000000	SAMN21474363	bin.200	Saprospiraceae bacterium
GCA_022844405.1	JALHLV000000000	SAMN21474281	Bin_23_8	Sphingomonadales bacterium
GCA_022842325.1	JALHPU000000000	SAMN21474384	bin.273	Sulfuritalea sp.
GCA_022843505.1	JALHNN000000000	SAMN21474325	Bin_62_2_sub	Sulfuritalea sp.
GCA_022842145.1	JALHQD000000000	SAMN21474393	bin.65	Tabrizicola sp.
GCA_022842125.1	JALHQG000000000	SAMN21474396	bin.73_sub	Thermoleophilia bacterium
GCA_022842485.1	JALHPL000000000	SAMN21474375	bin.238	Thermoleophilia bacterium
GCA_022844305.1	JALHLZ000000000	SAMN21474285	Bin_26_2_1_sub	Thermoleophilia bacterium
GCA_022842865.1	JALHOV000000000	SAMN21474359	bin.189_sub	Vulcanimicrobiota bacterium
GCA_022842545.1	JALHPJ000000000	SAMN21474373	bin.229	Xanthobacteraceae bacterium
GCA_022841585.1	JALHRE000000000	SAMN21474420	maxbin.094_sub	Xanthobacteraceae bacterium
GCA_022841625.1	JALHRD000000000	SAMN21474419	maxbin.090	Xanthobacteraceae bacterium
GCA_022844205.1	JALHMF000000000	SAMN21474291	Bin_30_3_2	Xanthobacteraceae bacterium
GCA_022844485.1	JALHLQ000000000	SAMN21474276	Bin_23_12	Xanthobacteraceae bacterium
GCA_022844575.1	JALHLL000000000	SAMN21474271	Bin_11_3_sub	bacterium
GCA_022844005.1	JALHMN000000000	SAMN21474299	Bin_33_3	bacterium
GCA_022841685.1	JALHRA000000000	SAMN21474416	maxbin.075_sub	bacterium
GCA_022841285.1	JALHRU000000000	SAMN21474436	maxbin.307_sub	bacterium
GCA_022841265.1	JALHRV000000000	SAMN21474437	maxbin.316_sub	bacterium
GCA_022842355.1	JALHPS000000000	SAMN21474382	bin.268_sub	bacterium
GCA_022842225.1	JALHPX000000000	SAMN21474387	bin.37	bacterium
GCA_022842165.1	JALHQC000000000	SAMN21474392	bin.62	bacterium

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Comammox Nitrospira bacteria dominate canonical nitrifiers irrespective of electron donor mode and availability

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