Escherichia coli (ID 638007) - BioProject

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Accession: PRJNA638007 ID: 638007

Escherichia coli

Horsing around: Escherichia coli ST1250 of equine origin harbouring epidemic IncHI1/ST9 plasmid with blaCTX-M-1 and an operon for short-chain fructooligosaccharides metabolism

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Comparative genome analysis of the equine-associated Escherichia coli ST1250 and its single- and double-locus variants (ST1250-SLV/DLV) harbouring IncHI1/ST9 encoding blaCTX-M-1 and the fos operon obtained from horses in Europe .

Accession	PRJNA638007
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Submission	Registration date: 14-Jun-2020 University of Veterinary and Pharmaceutical Sciences Brno

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	54
Other datasets
BioSample	54
Assembly	54

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

54
54

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_013341985.1	JABUWJ000000000	SAMN15163961	c15-1	Escherichia coli
GCA_013341955.1	JABUWF000000000	SAMN15163957	b5-2	Escherichia coli
GCA_013341935.1	JABUXF000000000	SAMN15163984	IHIT40273	Escherichia coli
GCA_013341925.1	JABUXG000000000	SAMN15163985	K6napajecka	Escherichia coli
GCA_013341905.1	JABUXN000000000	SAMN15163992	T22B	Escherichia coli
GCA_013341875.1	JABUXL000000000	SAMN15163990	T19B	Escherichia coli
GCA_013341865.1	JABUXJ000000000	SAMN15163988	Prestige_d.7_CTX_15	Escherichia coli
GCA_013342865.1	JABUXI000000000	SAMN15163987	N50B	Escherichia coli
GCA_013342835.1	JABUXH000000000	SAMN15163986	N33b	Escherichia coli
GCA_013342805.1	JABUWV000000000	SAMN15163973	d29-1	Escherichia coli
GCA_013342815.1	JABUWG000000000	SAMN15163958	c07-3	Escherichia coli
GCA_013342765.1	JABUWI000000000	SAMN15163960	c13-1	Escherichia coli
GCA_013342735.1	JABUWX000000000	SAMN15163976	IHIT19556	Escherichia coli
GCA_013342755.1	JABUWW000000000	SAMN15163975	Ham_CTX_10	Escherichia coli
GCA_013342715.1	JABUWY000000000	SAMN15163977	IHIT19589	Escherichia coli
GCA_013342705.1	JABUWH000000000	SAMN15163959	c09-2	Escherichia coli
GCA_013342685.1	JABUWZ000000000	SAMN15163978	IHIT19596	Escherichia coli
GCA_013342655.1	JABUWK000000000	SAMN15163962	c16-1	Escherichia coli
GCA_013342645.1	JABUXA000000000	SAMN15163979	IHIT19604	Escherichia coli
GCA_013342615.1	JABUXB000000000	SAMN15163980	IHIT19621	Escherichia coli
GCA_013342605.1	JABUXC000000000	SAMN15163981	IHIT19627	Escherichia coli
GCA_013342555.1	JABUXD000000000	SAMN15163982	IHIT19665	Escherichia coli
GCA_013342565.1	JABUXE000000000	SAMN15163983	IHIT19679	Escherichia coli
GCA_013342535.1	JABUWE000000000	SAMN15163956	b4-1	Escherichia coli
GCA_013342485.1	JABUWD000000000	SAMN15163955	999975_2	Escherichia coli
GCA_013342495.1	JABUWM000000000	SAMN15163964	c23-2	Escherichia coli
GCA_013342435.1	JABUWL000000000	SAMN15163963	c22-1	Escherichia coli
GCA_013342455.1	JABUWN000000000	SAMN15163965	c25-2	Escherichia coli
GCA_013342425.1	JABUWO000000000	SAMN15163966	d09-1	Escherichia coli
GCA_013342395.1	JABUWP000000000	SAMN15163967	d11-1	Escherichia coli
GCA_013342385.1	JABUWQ000000000	SAMN15163968	d13-2	Escherichia coli
GCA_013342335.1	JABUWS000000000	SAMN15163970	d16-1	Escherichia coli
GCA_013342355.1	JABUWT000000000	SAMN15163971	d16-2	Escherichia coli
GCA_013342315.1	JABUWU000000000	SAMN15163972	d17-3	Escherichia coli
GCA_013342305.1	JABUWR000000000	SAMN15163969	d14-1	Escherichia coli
GCA_013341825.1	JABUXK000000000	SAMN15163989	T18B	Escherichia coli
GCA_013341805.1	JABUXM000000000	SAMN15163991	T20	Escherichia coli
GCA_013341765.1	JABUVO000000000	SAMN15163940	100068	Escherichia coli
GCA_013341745.1	JABUVQ000000000	SAMN15163942	37691	Escherichia coli
GCA_013341755.1	JABUVN000000000	SAMN15163939	100063-3	Escherichia coli
GCA_013341725.1	JABUVP000000000	SAMN15163941	10N-B	Escherichia coli
GCA_013341705.1	JABUVS000000000	SAMN15163944	97989	Escherichia coli
GCA_013341685.1	JABUVR000000000	SAMN15163943	97974-2T	Escherichia coli
GCA_013341665.1	JABUVV000000000	SAMN15163947	99075	Escherichia coli
GCA_013341625.1	JABUVW000000000	SAMN15163948	99083	Escherichia coli
GCA_013341615.1	JABUVT000000000	SAMN15163945	98095	Escherichia coli
GCA_013341605.1	JABUVU000000000	SAMN15163946	99063	Escherichia coli
GCA_013341585.1	JABUVX000000000	SAMN15163949	99779-2	Escherichia coli
GCA_013341545.1	JABUWB000000000	SAMN15163953	99789-2RV	Escherichia coli
GCA_013341535.1	JABUWA000000000	SAMN15163952	99784-3T	Escherichia coli
GCA_013341525.1	JABUWC000000000	SAMN15163954	99978	Escherichia coli
GCA_013341495.1	JABUVZ000000000	SAMN15163951	99783	Escherichia coli
GCA_013341485.1	JABUVY000000000	SAMN15163950	99783-3T	Escherichia coli
GCA_013350235.1	JABVMR000000000	SAMN15163974	G.Consula_d.3_CTX_9	Escherichia coli

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Escherichia coli

Horsing around: Escherichia coli ST1250 of equine origin harbouring epidemic IncHI1/ST9 plasmid with blaCTX-M-1 and an operon for short-chain fructooligosaccharides metabolism

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