Escherichia coli (ID 595483) - BioProject

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Accession: PRJNA595483 ID: 595483

Escherichia coli

Extended-spectrum beta-lactamase-producing Escherichia coli and antibiotic resistance in municipal and hospital waters

See Genome Information for Escherichia coli

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In this study, whole-genome sequencing of beta-lactamase-producing Escherichia coli and metagenomic analysis of whole-community DNA were used to characterize antimicrobial resistance levels in hospital, municipal and river waters in the city of Brno (Czech Republic).

Accession	PRJNA595483
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Submission	Registration date: 22-Dec-2019 University of Veterinary and Pharmaceutical Sciences Brno

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	78
SRA Experiments	6
Other datasets
BioSample	84
Assembly	78

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

7
71
78

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_009789825.1	WSUX00000000	SAMN13556403	SH27c	Escherichia coli
GCA_009789815.1	WSUU00000000	SAMN13556406	SH34c	Escherichia coli
GCA_009791265.1	WSXQ00000000	SAMN13556329	IH3c	Escherichia coli
GCA_009791255.1	WSXP00000000	SAMN13556330	IH4c	Escherichia coli
GCA_009791245.1	WSXN00000000	SAMN13556332	IH8c	Escherichia coli
GCA_009791235.1	WSXO00000000	SAMN13556331	IH5c	Escherichia coli
GCA_009791195.1	WSXL00000000	SAMN13556334	IH11c	Escherichia coli
GCA_009791205.1	WSXM00000000	SAMN13556333	IH10c	Escherichia coli
GCA_009791165.1	WSXK00000000	SAMN13556335	IH23c	Escherichia coli
GCA_009791125.1	WSXI00000000	SAMN13556337	IH28c	Escherichia coli
GCA_009791155.1	WSXJ00000000	SAMN13556336	IH27c	Escherichia coli
GCA_009791115.1	WSXH00000000	SAMN13556338	IH30c	Escherichia coli
GCA_009791085.1	WSXG00000000	SAMN13556339	IH36c	Escherichia coli
GCA_009791075.1	WSXF00000000	SAMN13556340	IH37c	Escherichia coli
GCA_009791025.1	WSXE00000000	SAMN13556341	IH38c	Escherichia coli
GCA_009791015.1	WSXD00000000	SAMN13556342	IM1c	Escherichia coli
GCA_009791035.1	WSXC00000000	SAMN13556343	IM2c	Escherichia coli
GCA_009790995.1	WSXB00000000	SAMN13556344	IM7c	Escherichia coli
GCA_009790975.1	WSXA00000000	SAMN13556345	IM8c	Escherichia coli
GCA_009790935.1	WSWZ00000000	SAMN13556346	IM9c	Escherichia coli
GCA_009790925.1	WSWX00000000	SAMN13556348	IM13c	Escherichia coli
GCA_009790915.1	WSWY00000000	SAMN13556347	IM12c	Escherichia coli
GCA_009790885.1	WSWW00000000	SAMN13556349	IM16c	Escherichia coli
GCA_009790875.1	WSWV00000000	SAMN13556350	IM17c	Escherichia coli
GCA_009790845.1	WSWU00000000	SAMN13556351	IM21c	Escherichia coli
GCA_009790825.1	WSWS00000000	SAMN13556353	IM24c	Escherichia coli
GCA_009790815.1	WSWT00000000	SAMN13556352	IM22c	Escherichia coli
GCA_009790775.1	WSWQ00000000	SAMN13556355	IM30c	Escherichia coli
GCA_009790785.1	WSWR00000000	SAMN13556354	IM28c	Escherichia coli
GCA_009790745.1	WSWP00000000	SAMN13556356	IM33c	Escherichia coli
GCA_009790715.1	WSWN00000000	SAMN13556358	IM36c	Escherichia coli
GCA_009790725.1	WSWO00000000	SAMN13556357	IM34c	Escherichia coli
GCA_009790695.1	WSWM00000000	SAMN13556359	IM37c	Escherichia coli
GCA_009790635.1	WSWL00000000	SAMN13556360	IM38c	Escherichia coli
GCA_009790645.1	WSWK00000000	SAMN13556362	OM1c	Escherichia coli
GCA_009790625.1	WSWJ00000000	SAMN13556363	OM2c	Escherichia coli
GCA_009790615.1	WSWI00000000	SAMN13556364	OM3c	Escherichia coli
GCA_009790585.1	WSWH00000000	SAMN13556365	OM5c	Escherichia coli
GCA_009790565.1	WSWG00000000	SAMN13556366	OM7c	Escherichia coli
GCA_009790525.1	WSWD00000000	SAMN13556370	OM11c	Escherichia coli
GCA_009790535.1	WSWF00000000	SAMN13556367	OM8c	Escherichia coli
GCA_009790515.1	WSWE00000000	SAMN13556369	OM10c	Escherichia coli
GCA_009790485.1	WSWC00000000	SAMN13556371	OM12c	Escherichia coli
GCA_009790475.1	WSWA00000000	SAMN13556373	OM14c	Escherichia coli
GCA_009790425.1	WSVY00000000	SAMN13556375	OM16c	Escherichia coli
GCA_009790435.1	WSWB00000000	SAMN13556372	OM13c	Escherichia coli
GCA_009790415.1	WSVZ00000000	SAMN13556374	OM15c	Escherichia coli
GCA_009790385.1	WSVX00000000	SAMN13556376	OM17c	Escherichia coli
GCA_009790365.1	WSVW00000000	SAMN13556377	OM20c	Escherichia coli
GCA_009790335.1	WSVV00000000	SAMN13556378	OM21c	Escherichia coli
GCA_009790325.1	WSVU00000000	SAMN13556379	OM22c	Escherichia coli
GCA_009790315.1	WSVT00000000	SAMN13556380	OM23c	Escherichia coli
GCA_009790285.1	WSVS00000000	SAMN13556381	OM24c	Escherichia coli
GCA_009790265.1	WSVQ00000000	SAMN13556383	OM29c	Escherichia coli
GCA_009790255.1	WSVR00000000	SAMN13556382	OM28c	Escherichia coli
GCA_009790225.1	WSVO00000000	SAMN13556385	OM34c	Escherichia coli
GCA_009790215.1	WSVP00000000	SAMN13556384	OM30c	Escherichia coli
GCA_009790195.1	WSVN00000000	SAMN13556386	OM35c	Escherichia coli
GCA_009790155.1	WSVM00000000	SAMN13556387	OM37c	Escherichia coli
GCA_009790135.1	WSVL00000000	SAMN13556388	OM38c	Escherichia coli
GCA_009790125.1	WSVK00000000	SAMN13556389	OM39c	Escherichia coli
GCA_009790115.1	WSVJ00000000	SAMN13556390	R6cA	Escherichia coli
GCA_009790095.1	WSVI00000000	SAMN13556391	R7c	Escherichia coli
GCA_009790065.1	WSVH00000000	SAMN13556392	R14c	Escherichia coli
GCA_009790025.1	WSVF00000000	SAMN13556394	SH1c	Escherichia coli
GCA_009790035.1	WSVG00000000	SAMN13556393	R27c	Escherichia coli
GCA_009790015.1	WSVE00000000	SAMN13556395	SH4c	Escherichia coli
GCA_009789995.1	WSVD00000000	SAMN13556396	SH5c	Escherichia coli
GCA_009789955.1	WSUZ00000000	SAMN13556400	SH12c	Escherichia coli
GCA_009789965.1	WSUY00000000	SAMN13556402	SH25c	Escherichia coli
GCA_009789925.1	WSVC00000000	SAMN13556397	SH8c	Escherichia coli
GCA_009789905.1	WSVB00000000	SAMN13556398	SH9c	Escherichia coli
GCA_009789895.1	WSVA00000000	SAMN13556399	SH10c	Escherichia coli
GCA_009789845.1	WSUW00000000	SAMN13556404	SH30c	Escherichia coli
GCA_009789835.1	WSUV00000000	SAMN13556405	SH33c	Escherichia coli
GCA_009799325.1	WTVD00000000	SAMN13556361	IM40c	Escherichia coli
GCA_009799295.1	WTVC00000000	SAMN13556368	OM9c	Escherichia coli
GCA_009799285.1	WTVB00000000	SAMN13556401	SH20c	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	3
Data volume, Mbytes	1940

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Escherichia coli

Extended-spectrum beta-lactamase-producing Escherichia coli and antibiotic resistance in municipal and hospital waters

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