Salmonella enterica subsp. enterica serovar Montev... (ID 61937) - BioProject

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Accession: PRJNA61937 ID: 61937

Salmonella enterica subsp. enterica serovar Montevideo outbreak analysis

See Genome Information for Salmonella enterica

Analysis of Salmonella Montevideo outbreak via molecular means.

Accession	PRJNA61937
Type	Umbrella project (Subtype:Disease)
Organism	Salmonella enterica subsp. enterica serovar Montevideo[Taxonomy ID: 115981] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica serovar Montevideo
Publications (total 4) Less...	Allard MW et al., "High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach.", BMC Genomics, 2012 Jan 19;13:32 More... Allard MW et al., "High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach.", BMC Genomics, 2012 Jan 19;13:32 Lienau EK et al., "Identification of a salmonellosis outbreak by means of molecular sequencing.", N Engl J Med, 2011 Mar 10;364(10):981-2 Bakker HC et al., "A whole-genome single nucleotide polymorphism-based approach to trace and identify outbreaks linked to a common Salmonella enterica subsp. enterica serovar Montevideo pulsed-field gel electrophoresis type.", Appl Environ Microbiol, 2011 Dec;77(24):8648-55 Centers for Disease Control and Prevention (CDC) "Salmonella montevideo infections associated with salami products made with contaminated imported black and red pepper --- United States, July 2009-April 2010.", MMWR Morb Mortal Wkly Rep, 2010 Dec 24;59(50):1647-50 Less...
Submission	Registration date: 12-Jan-2011 Center for Food Safety and Applied Nutrition
Relevance	Medical, Industrial

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6419
WGS master	57
Genomic DNA	1397
SRA Experiments	187
Protein Sequences	225908
Publications
PubMed	5
PMC	3
Other datasets
BioSample	120
PopSet	40
Assembly	59

SRA Data Details

Parameter	Value
Data volume, Gbases	56
Data volume, Mbytes	79625

Salmonella enterica subsp. enterica serovar Montevideo outbreak analysis encompasses the following 110 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

Complete genome
Contigs
SRA or Trace
Total

2
56
51
109

BioProject accession	Assembly level	Organism	Title
PRJNA71663	SRA or Trace	Salmonella enterica subsp. enterica serovar Montevideo	Salmonella enterica subsp. enterica serovar Montevideo str. R8_4929 Genome Sequencing Project (Life Technologies)
PRJNA48457	Contigs	Salmonella enterica subsp. enterica serovar Montevideo str. 19N	Salmonella enterica subsp. enterica serovar Montevideo str. 19N genome sequencing (FDA)
PRJNA51389	Contigs	Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312	Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312 genome sequencing (FDA)
PRJNA51391	Contigs	Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258	Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258 genome sequencing (FDA)
PRJNA48459	Contigs	Salmonella enterica subsp. enterica serovar Montevideo str. 29N	Salmonella enterica subsp. enterica serovar Montevideo str. 29N genome sequencing (FDA)

List all 109 'Genome sequencing' projects...

Targeted Locus (Loci)

BioProject accession	Organism	Title
PRJNA61935	Salmonella enterica subsp. enterica serovar Montevideo	Salmonella enterica subsp. enterica serovar Montevideo Targeted locus (FDA)

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Salmonella enterica subsp. enterica serovar Montevideo outbreak analysis

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