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Accession: PRJEB66366 ID: 1021477

SeqAfrica Projects

Projects under the SeqAfrica Projects umbrella contain sequence data generated by the SeqAfrica Consortium. SeqAfrica is funded by the UK Department of Health and Social Care’s Fleming Fund (https://www.flemingfund.org) using UK Aid. The consortium supports genomic surveillance efforts of antimicrobial resistance (AMR) on the African continent through whole genome sequencing of bacterial pathogens and bioinformatic analyses for the consortium’s national surveillance projects, and for individual clients across Africa, of e.g. outbreak investigations in a One Health framework. The consortium has also contributed to the global pandemic surveillance efforts of SARS-CoV-2. The projects aims to generate data on the continent for the continent, democratising sequencing and filling in gaps of knowledge, generating data for action in the fight against AMR.
AccessionPRJEB66366
TypeUmbrella project
SubmissionRegistration date: 27-Sep-2023
- the seqafrica consortium
- Noguchi Memorial Institute of Medical Research (NMIMR), Ghana
- National Institute for Communicable Diseases (NICD), South Africa
- Institut Pasteur Dakar (IPD), Senegal
- Kilimanjaro Clinical Research Institute (KCRI), Tanzania
- University of Ibadan, Nigeria
- Technical University of Denmark (DTU), Denmark
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)164142
WGS master997
Genomic DNA4
SRA Experiments1001
Protein Sequences6230
Publications
PubMed3
PMC3
Other datasets
BioSample1000
Assembly999
SRA Data Details
ParameterValue
Data volume, Gbases366
Data volume, Tbytes0.16
This project encompasses the following 11 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Contigs

10
BioProject
accession
Assembly
level
NameTitle
PRJEB78366 ContigsAcinetobacter sp.Acinetobacter spp. isolates from patients attending regional referral hospitals in Tanzania (the seqafrica consortium)
PRJEB78444 ContigsBacterial isolates from patients attending regional referral hospitals in TanzaniaBacterial isolates from patients attending regional referral hospitals in Tanzania (the seqafrica consortium)
PRJEB78369 ContigsEnterobacter sp.Enterobacter spp. isolates from patients attending regional referral hospitals in Tanzania (the seqafrica consortium)
PRJEB78370 ContigsEnterococcus sp.Enterococcus spp. isolates from patients attending regional referral hospitals in Tanzania (the seqafrica consortium)
PRJEB71714 ContigsEscherichia coliShort reads-based characterization of pathotype diversity and drug resistance among E. coli isolated from patients attending regional referral hospitals of Tanzania (the seqafrica consortium)
List all 10 'Genome sequencing' projects...
Other1
BioProject
accession
OrganismTitle
PRJEB66434Brucella abortusComplete genome sequence of Brucella abortus isolated from a human blood culture sample in Tanzania (Kilimanjaro Clinical Research...)

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