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Accession: PRJNA178102 ID: 178102

Leptospira Genomics and Human Health project at JCVI

Examination of Leptospira isolates, as part of the Genomic Sequencing Centers for Infectious Diseases contract from NIAID, NIH. As described at JCVI , we plan to sequence up to 200 Leptospira species/new serovars using 454 Titanium with 8 kb paired-end libraries in order to generate high-quality draft genomes to serve as reference genomes for downstream mapping of Illumina reads and to gain an understanding of their genome structure. In addition, we plan to sequence up to 252 additional Leptospira serovars using the Illumina platform.
AccessionPRJNA178102
TypeUmbrella project (Subtype:Disease)
OrganismLeptospira[Taxonomy ID: 171]
Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Leptospirales; Leptospiraceae; Leptospira
Grants
  • "NIAID Genomic Sequencing Centers for Infectious Diseases" (Grant ID HHSN272200900007C, National Institutes of Health)
SubmissionRegistration date: 22-Oct-2012
J. Craig Venter Institute
Related Resources
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)58791
WGS master241
Genomic DNA8
SRA Experiments347
Protein Sequences636066
Publications
PubMed3
PMC3
Other datasets
BioSample452
Assembly247
SRA Data Details
ParameterValue
Data volume, Gbases102
Data volume, Mbytes91849
This project encompasses the following 255 sub-projects:
Project TypeNumber of Projects
Genome sequencing

1
89
152
13
255
BioProject
accession
Assembly
level
OrganismTitle
PRJNA74069 ContigsLeptospira alexanderi serovar Manhao 3 str. L 60Leptospira alexanderi serovar Manhao 3 str. L 60 Genome sequencing and assembly (J. Craig Venter Institute)
PRJNA177154 ContigsLeptospira alstonii serovar Pingchang str. 80-412Leptospira Genomics And Human Health (J. Craig Venter Institute)
PRJNA177155 ContigsLeptospira alstonii serovar Sichuan str. 79601Leptospira Genomics And Human Health (J. Craig Venter Institute)
PRJNA177139 No data linksLeptospira borgpetersenii serovar Arborea str. LT2208Leptospira Genomics And Human Health (J. Craig Venter Institute)
PRJNA74139 ContigsLeptospira borgpetersenii serovar Castellonis str. 200801910Leptospira borgpetersenii serovar Castellonis str. 200801910 Genome sequencing and assembly (J. Craig Venter Institute)
List all 255 'Genome sequencing' projects...

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