See
Genome Information for Carcharodon carcharias
Navigate Up
Navigate Across
The great white shark (Carcharodon carcharias) can be found in the coastal surface waters of all the major oceans, and is one of the larger size sharks. This assembly has been produced as part of the G10K-VGP project. Sequencing was conducted with PacBio long reads, Bionano optical maps, and 10X Genomics linked reads at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo, HiC at Arima Genomics, and Illumina sequencing. Genome assembly was conducted by Olivier Fedrigo and Giulio Formenti, and supervised by Arang Rhie, using the VGP 1.6 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. Genome coordination and funding was by Gavin Naylor. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/
| Accession | PRJNA562191 |
| Type | Umbrella project |
| Organism | Carcharodon carcharias[Taxonomy ID: 13397] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Lamniformes; Alopiidae; Carcharodon; Carcharodon carcharias |
| Submission | Registration date: 26-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 50632 |
| WGS master | 2 |
| Transcript | 49827 |
| SRA Experiments | 28 |
| Protein Sequences | 44443 |
| Publications |
| PubMed | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total |
2
1
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA562007 | Chromosomes | Carcharodon carcharias | Carcharodon carcharias (Great white shark) genome, sCarCar2, primary haplotype (Vertebrate Genomes Project) | | PRJNA562008 | Scaffolds | Carcharodon carcharias | Carcharodon carcharias (Great white shark) genome, sCarCar2, alternate haplotype (Vertebrate Genomes Project) | | PRJNA725502 | Chromosomes | Carcharodon carcharias | Carcharodon carcharias isolate:sCarCar2 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1008651 | SRA or Trace | Carcharodon carcharias (Great white shark) genome, sCarCar2, sequence data | Carcharodon carcharias (Great white shark) genome, sCarCar2, sequence data (G10K) |
|