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Genome Information for Arvicanthis niloticus
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Arvicanthis Niloticus, commonly known as the Nile rat or African grass rat, is a valuable model organism used in various areas of research including behavioral neuroscience, nutrition science, ophthalmology and evolutionary biology. Native to Northern Africa, this diurnal rodent has a diet primarily of leaves and stems, supplemented with insects, seeds, and fruits. However, when maintained in a laboratory environment with a rodent chow diet that has high caloric content relative to its native diet, both sexes rapidly develop diet-induced diabetes. By mimicking the disease etiology, the Nile rat provides an important animal model to study the causality of type 2 diabetes and is a suitable pre-clinical model. These samples were collected from a male and his parents in a laboratory colony of Huishi Toh and James Thomson at University of California, Santa Barbara, and used to generate chromosomal level reference assembly as part of the G10K-VGP project.
Accession | PRJNA562178 |
Type | Umbrella project |
Organism | Arvicanthis niloticus[Taxonomy ID: 61156] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis; Arvicanthis niloticus |
Submission | Registration date: 26-Aug-2019 Vertebrate Genomes Project |
Relevance | Model Organism |
Project Data:
Resource Name | Number of Links |
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Sequence data |
Nucleotide (total) | 47607 |
WGS master | 3 |
Transcript | 45963 |
SRA Experiments | 28 |
Protein Sequences | 41473 |
Publications |
PubMed | 1 |
PMC | 1 |
Other datasets |
BioSample | 1 |
Assembly | 3 |
This project encompasses the following 5 sub-projects:
Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace No data links Total | 1 2 1 1 5
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BioProject accession | Assembly level | Name | Title |
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PRJNA561935 | Scaffolds | Arvicanthis niloticus | Arvicanthis niloticus (Nile rat) genome, mArvNil1, paternal haplotype (Vertebrate Genomes Project) | PRJNA561936 | Scaffolds | Arvicanthis niloticus | Arvicanthis niloticus (Nile rat) genome, mArvNil1, maternal haplotype (Vertebrate Genomes Project) | PRJNA608735 | Chromosomes | Arvicanthis niloticus | Arvicanthis niloticus (Nile rat) genome, mArvNil1, paternal haplotype with X (Vertebrate Genomes Project) | PRJNA632612 | No data links | Arvicanthis niloticus | Arvicanthis niloticus isolate:mArvNil1 RefSeq Genome sequencing and assembly (NCBI) | PRJNA1008597 | SRA or Trace | Arvicanthis niloticus (Nile rat) genome, mArvNil1, sequence data | Arvicanthis niloticus (Nile rat) genome, mArvNil1, sequence data (G10K) |
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