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Genome Information for Lepisosteus oculatus
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The spotted gar (Lepisosteus oculatus) is a freshwater fish native to North America. Its current range is from southern Ontario to the west from the Devils River in Texas east to the northern coast of the Gulf of Mexico and southeast to the lower Apalachicola River in Florida (from Wikipedia entry). This sample of a male individual found in Louisiana, United States was procured by Ingo Braasch and Allyse Ferrara to generate a high-quality reference genome data for the Vertebrate Genomes Project (VGP). Sequencing was conducted at the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco.
| Accession | PRJNA1108750 |
| Type | Umbrella project |
| Organism | Lepisosteus oculatus[Taxonomy ID: 7918] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus; Lepisosteus oculatus |
| Submission | Registration date: 7-May-2024
Vertebrate Genomes Project |
| Relevance | Reference Genome |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 65536 |
| WGS master | 2 |
| Transcript | 64630 |
| SRA Experiments | 7 |
| Protein Sequences | 48387 |
| Publications |
| PubMed | 2 |
| PMC | 2 |
| Other datasets |
| BioSample | 4 |
| Assembly | 2 |
This project encompasses the following 5 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes SRA or Trace Total |
3
2
5
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA1106999 | Chromosomes | Lepisosteus oculatus | Lepisosteus oculatus (spotted gar) genome, fLepOcu1, haplotype 2 (Vertebrate Genomes Project) | | PRJNA1106998 | Chromosomes | Lepisosteus oculatus | Lepisosteus oculatus (spotted gar) genome, fLepOcu1, haplotype 1 (Vertebrate Genomes Project) | | PRJNA1158843 | Chromosomes | Lepisosteus oculatus | Lepisosteus oculatus isolate:fLepOcu1 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1137080 | SRA or Trace | Lepisosteus oculatus (spotted gar) genome, fLepOcu1, sequence data | Lepisosteus oculatus (spotted gar) genome, fLepOcu1, sequence data (Vertebrate Genomes Project) | | PRJNA1112542 | SRA or Trace | Lepisosteus oculatus (spotted gar) transcriptome, fLepOcu2 | Lepisosteus oculatus (spotted gar) transcriptome, fLepOcu2 (Vertebrate Genomes Project) |
|