This is a de novo assembly of the Brown Norway inbred rat strain that utilized long range methods.
More...This is a de novo assembly of the Brown Norway inbred rat strain that utilized long range methods. The strain identity is BN/NHsdMcwi (Rat Genome Database ID RGD_61498). This assembly incorporates optical mapping, chromosomal conformation capture (Hi-C), and PacBio HiFi sequencing data. The final assembly was curated manually using the Wellcome Sanger Institute "Rapid Curation" pipeline. The Genome Reference Consortium (GRC) has assumed stewardship for this assembly. The GRC consists of: The Wellcome Sanger Institute, The McDonnell Genome Institute at Washington University, The European Bioinformatics Institute, the Zebrafish Information Network, the Rat Genome Database, and the National Center for Biotechnology Information. The public can report genome problems at the GRC website, http://genomereference.org.
Less...| Accession | PRJNA1027884 |
| Data Type | Genome sequencing and assembly |
| Scope | Multispecies |
| Publications | Li K et al., "Construction and evaluation of a new rat reference genome assembly, GRCr8, from long reads and long-range scaffolding.", Genome Res, 2024 Nov 20;34(11):2081-2093 |
| Grants | - "Long-read assembly and annotation of rat genomes that are important models of complex genetic disease" (Grant ID R01 HG011252, National Human Genome Research Institute)
- "Long-read assembly and annotation of rat genomes that are important models of complex genetic disease" (Grant ID R01 HG011252, National Human Genome Research Institute)
- "Long-read assembly and annotation of rat genomes that are important models of complex genetic disease" (Grant ID R01 HG011252, National Human Genome Research Institute)
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| Submission | Registration date: 13-Oct-2023
Genome Reference Consortium- Sanger Institute- Medical College of Wisconsin - University of Texas McGovern Medical School |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 24 |
| WGS master | 1 |
| SRA Experiments | 44 |
| Publications |
| PubMed | 1 |
| Other datasets |
| BioSample | 7 |
| Assembly | 1 |
Related Project Category: RefseqGenbank