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Genome Information for Choloepus didactylus
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Choloepus didactylus, commonly known as Linnaeus's two-toed sloth, is a native species from South America. This assembly has been produced as part of the G10K-VGP project. Sequencing was conducted with Pacific long reads at the Max Planck Institute in Dresden led by Gene Myers; Bionano optical maps, 10X Genomics libraries at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo; HiC at Arima Genomics, and Illumina sequencing. Genome assembly was conducted by Marcela Uliano-Silva, using the VGP 1.5 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. Funding was raised by Camila Mazzoni and Gene Myers. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/
| Accession | PRJNA562198 |
| Type | Umbrella project |
| Organism | Choloepus didactylus[Taxonomy ID: 27675] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Xenarthra; Pilosa; Folivora; Megalonychidae; Choloepus; Choloepus didactylus |
| Submission | Registration date: 26-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 63247 |
| WGS master | 2 |
| Transcript | 63041 |
| SRA Experiments | 42 |
| Protein Sequences | 54514 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total |
2
1
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA561937 | Chromosomes | Choloepus didactylus | Choloepus didactylus (Linnaeus's two-toed sloth) genome, mChoDid1, primary haplotype (Vertebrate Genomes Project) | | PRJNA561938 | Scaffolds | Choloepus didactylus | Choloepus didactylus (Linnaeus's two-toed sloth) genome, mChoDid1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA678727 | Chromosomes | Choloepus didactylus | Choloepus didactylus isolate:mChoDid1 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1008600 | SRA or Trace | Choloepus didactylus (Linnaeus's two-toed sloth) genome, mChoDid1, sequence data | Choloepus didactylus (Linnaeus's two-toed sloth) genome, mChoDid1, sequence data (G10K) |
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