ID 746600 - BioProject

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Accession: PRJNA746600 ID: 746600

Design, construction, and in vivo augmentation of a complex gut bacterial community

We construct and characterize in vitro a defined community of 104 bacterial species composed of the most common taxa from the human gut microbiota (hCom1). More...

Accession	PRJNA746600
Data Type	Raw sequence reads
Scope	Multispecies
Publications	Cheng AG et al., "Design, construction, and in vivo augmentation of a complex gut microbiome.", Cell, 2022 Sep 15;185(19):3617-3636.e19
Grants	"A universal pipeline for functional characterization of the human microbiota at a massive scale" (Grant ID RM1 GM135102, National Institute of General Medical Sciences) "A universal pipeline for functional characterization of the human microbiota at a massive scale" (Grant ID RM1 GM135102, National Institute of General Medical Sciences) "Mechanistic models for predicting the dynamics of microbial communities" (Grant ID F32 GM143859, National Institute of General Medical Sciences) "Dietary and Microbial Reprogramming of Intestinal Microbiota-Produced Metabolites" (Grant ID R01 DK101674, National Institute of Diabetes and Digestive and Kidney Diseases) "A complete map of the top 100 molecules from the gut microbiome" (Grant ID DP1 DK113598, National Institute of Diabetes and Digestive and Kidney Diseases)
Submission	Registration date: 14-Jul-2021 Stanford University
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	46
SRA Experiments	166
Protein Sequences	147520
Publications
PubMed	1
PMC	1
Other datasets
BioSample	87
Assembly	46

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Total

46
46

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_025144545.1	1	SAMN20222632	D21	Acidaminococcus intestini
GCA_025144665.1	1	SAMN20222633	AP11	Alistipes ihumii AP11
GCA_025144995.1	1	SAMN20222634	YIT 12060	Alistipes indistinctus YIT 12060
GCA_025145285.1	1	SAMN20222635	DSM 19147	Alistipes onderdonkii
GCA_025145645.1	1	SAMN20222637	JC50	Alistipes senegalensis JC50
GCA_025145845.1	1	SAMN20222638	WAL 8301	Alistipes shahii WAL 8301
GCA_025146005.1	1	SAMN20222639	DSM 14662	Anaerostipes caccae L1-92
GCA_025146135.1	1	SAMN20222640	DSM 17241	Anaerotruncus colihominis
GCA_025146315.1	1	SAMN20222641	ATCC 43185	Bacteroides caccae
GCA_025146565.1	1	SAMN20222646	DSM 20697	Bacteroides eggerthii
GCA_025146775.1	1	SAMN20222651	ATCC 8483	Bacteroides ovatus
GCA_025147085.1	1	SAMN20222658	D2	Bacteroides sp. D2
GCA_025147325.1	1	SAMN20222659	ATCC 43183	Bacteroides stercoris ATCC 43183
GCA_025147485.1	1	SAMN20222662	ATCC 8492	Bacteroides uniformis
GCA_025147655.1	1	SAMN20222664	DSM 20583	Blautia hansenii DSM 20583
GCA_025147765.1	1	SAMN20222666	ATCC 29174	Blautia obeum ATCC 29174
GCA_025147905.1	1	SAMN20222667	KLE_1732_HM_1032	Blautia sp. KLE_1732_HM_1032
GCA_025148125.1	1	SAMN20222668	DSM 19850	Blautia wexlerae DSM 19850
GCA_025148635.1	1	SAMN20222670	DSM 23226	Butyricimonas virosa
GCA_025148785.1	1	SAMN20222672	DSM 15897	Catenibacterium mitsuokai
GCA_025149625.1	1	SAMN20222685	DSM 13279	Collinsella stercoris
GCA_025149785.1	1	SAMN20222686	ATCC 27758	Coprococcus comes ATCC 27758
GCA_025149915.1	1	SAMN20222687	ATCC 27759	Coprococcus eutactus
GCA_025150245.1	1	SAMN20222688	ATCC 27755	Dorea formicigenerans
GCA_025150085.1	1	SAMN20222689	DSM 13814	Dorea longicatena
GCA_025149125.1	1	SAMN20222674	DSM 15981	[Clostridium] asparagiforme DSM 15981
GCA_025148445.1	1	SAMN20222671	DSM 2876	Eshraghiella crossota
GCA_025150745.1	1	SAMN20222692	ATCC 27560	Eubacterium ventriosum
GCA_025150565.1	1	SAMN20222693	ATCC 49175	Granulicatella adiacens ATCC 49175
GCA_025151385.1	1	SAMN20222704	ATCC 35310	Hoylesella buccalis ATCC 35310
GCA_025149285.1	1	SAMN20222677	DSM 13479	Hungatella hathewayi
GCA_025148965.1	1	SAMN20222675	DSM 16795	Intestinibacter bartlettii
GCA_025150895.1	1	SAMN20222695	ATCC 25644	Ligilactobacillus ruminis
GCA_025148285.1	1	SAMN20222669	DSM 14469	Marvinbryantia formatexigens DSM 14469
GCA_025152275.1	1	SAMN20222710	ATCC 29149	Mediterraneibacter gnavus ATCC 29149
GCA_025151045.1	1	SAMN20222700	DSM 18315	Parabacteroides johnsonii DSM 18315
GCA_025151215.1	1	SAMN20222701	ATCC 43184	Parabacteroides merdae ATCC 43184
GCA_025146415.1	1	SAMN20222645	DSM 17855	Phocaeicola dorei
GCA_025151715.1	1	SAMN20222706	L1 82	Roseburia intestinalis
GCA_025151995.1	1	SAMN20222709	DSM 19829	Ruminococcus gauvreauii
GCA_025151535.1	1	SAMN20222705	DSM 18205	Segatella copri DSM 18205
GCA_025152575.1	1	SAMN20222717	DSM 15176	Subdoligranulum variabile
GCA_025149465.1	1	SAMN20222683	DSM 1552	Thomasclavelia spiroformis DSM 1552
GCA_025146925.1	1	SAMN20222652	ATCC 43243	[Bacteroides] pectinophilus
GCA_025150425.1	1	SAMN20222691	DSM 15702	[Eubacterium] siraeum
GCA_025152405.1	1	SAMN20222711	ATCC 29176	[Ruminococcus] lactaris ATCC 29176

SRA Data Details

Parameter	Value
Data volume, Gbases	445
Data volume, Tbytes	0.24

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Design, construction, and in vivo augmentation of a complex gut bacterial community

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