ID 984157 - BioProject

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Accession: PRJEB63188 ID: 984157

EMG produced TPA metagenomics assembly of PRJNA866654 data set (Exploring gut microbiome in predicting efficacy of immuno-therapy in non-small cell lung cancer).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA866654, and was assembled with metaspades v3. More...

Accession	PRJEB63188
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578
Submission	Registration date: 15-Jun-2023 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	14870
WGS master	217
Publications
PubMed	1
PMC	1
Other datasets
BioSample	217
Assembly	217

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

217
217

Assembly	WGS	BioSample	Taxonomy
GCA_959026875.1	CAUFNG000000000	SAMEA114095826	Acidaminococcus fermentans
GCA_959027435.1	CAUFOS000000000	SAMEA114095608	Acidaminococcus intestini
GCA_959027645.1	CAUFPF000000000	SAMEA114095892	Actinotignum sanguinis
GCA_959019625.1	CAUEPD000000000	SAMEA114095588	Agathobacter rectalis
GCA_959027665.1	CAUFOW000000000	SAMEA114095887	Akkermansia muciniphila
GCA_959018795.1	CAUEMM000000000	SAMEA114095664	Alistipes communis
GCA_959019895.1	CAUEPZ000000000	SAMEA114095836	Alistipes finegoldii
GCA_959019815.1	CAUEPR000000000	SAMEA114095817	Alistipes ihumii
GCA_959018885.1	CAUEMN000000000	SAMEA114095806	Alistipes indistinctus
GCA_959019785.1	CAUEPQ000000000	SAMEA114095642	Alistipes onderdonkii
GCA_959019585.1	CAUEOZ000000000	SAMEA114095543	Alistipes putredinis
GCA_959017995.1	CAUEJE000000000	SAMEA114095648	Alistipes shahii
GCA_959018005.1	CAUEJJ000000000	SAMEA114095750	Amedibacillus dolichus
GCA_959018495.1	CAUELE000000000	SAMEA114095530	Anaerostipes caccae
GCA_959026625.1	CAUFMI000000000	SAMEA114095604	Anaerostipes hadrus
GCA_959018725.1	CAUEMH000000000	SAMEA114095540	Anaerotignum lactatifermentans
GCA_959018075.1	CAUEJT000000000	SAMEA114095598	Anaerotruncus colihominis
GCA_959018595.1	CAUEMJ000000000	SAMEA114095569	Bacteroides caccae
GCA_959026595.1	CAUFMD000000000	SAMEA114095560	Bacteroides cellulosilyticus
GCA_959018835.1	CAUEMO000000000	SAMEA114095667	Bacteroides eggerthii
GCA_959029425.1	CAUFUV000000000	SAMEA114095522	Bacteroides fragilis
GCA_959019855.1	CAUEQO000000000	SAMEA114095703	Bacteroides pyogenes
GCA_959019495.1	CAUEOR000000000	SAMEA114095516	Bacteroides stercoris
GCA_959019695.1	CAUEPI000000000	SAMEA114095624	Bacteroides thetaiotaomicron
GCA_959019685.1	CAUEPK000000000	SAMEA114095632	Bacteroides uniformis
GCA_959026945.1	CAUFNJ000000000	SAMEA114095924	Bacteroides xylanisolvens
GCA_959019825.1	CAUEPV000000000	SAMEA114095813	Barnesiella intestinihominis
GCA_959019435.1	CAUEOH000000000	SAMEA114095769	Bifidobacterium adolescentis
GCA_959026895.1	CAUFNA000000000	SAMEA114095798	Bifidobacterium bifidum
GCA_959019745.1	CAUEPL000000000	SAMEA114095719	Bifidobacterium breve
GCA_959018325.1	CAUEKG000000000	SAMEA114095683	Bifidobacterium longum
GCA_959019705.1	CAUEPH000000000	SAMEA114095660	Bifidobacterium pseudocatenulatum
GCA_959027475.1	CAUFPG000000000	SAMEA114095775	Bifidobacterium pullorum
GCA_959028435.1	CAUFUL000000000	SAMEA114095854	Bilophila wadsworthia
GCA_959019635.1	CAUEOY000000000	SAMEA114095612	Blautia hydrogenotrophica
GCA_959019805.1	CAUEPY000000000	SAMEA114095801	Blautia obeum
GCA_959027755.1	CAUFQK000000000	SAMEA114095754	Blautia obeum
GCA_959026585.1	CAUFME000000000	SAMEA114095575	Blautia wexlerae
GCA_959026605.1	CAUFML000000000	SAMEA114095638	Candidatus Mediterraneibacter avicola
GCA_959022445.1	CAUEYQ000000000	SAMEA114095898	Catenibacterium mitsuokai
GCA_959018505.1	CAUELG000000000	SAMEA114095566	Collinsella intestinalis
GCA_959019375.1	CAUEOK000000000	SAMEA114095735	Desulfovibrio piger
GCA_959027405.1	CAUFPB000000000	SAMEA114095614	Dialister invisus
GCA_959026555.1	CAUFMO000000000	SAMEA114095519	Eggerthella lenta
GCA_959018415.1	CAUEKY000000000	SAMEA114095696	Escherichia coli
GCA_959019615.1	CAUEPJ000000000	SAMEA114095600	Eubacterium callanderi
GCA_959024715.1	CAUFGF000000000	SAMEA114095911	Faecalibacterium prausnitzii
GCA_959027385.1	CAUFOP000000000	SAMEA114095692	Faecalibacterium prausnitzii
GCA_959027415.1	CAUFOR000000000	SAMEA114095644	Faecalibacterium prausnitzii
GCA_959027325.1	CAUFOJ000000000	SAMEA114095594	Faecalibacterium prausnitzii
GCA_959023865.1	CAUFDT000000000	SAMEA114095518	Flavonifractor plautii
GCA_959018335.1	CAUEKK000000000	SAMEA114095688	Fusicatenibacter saccharivorans
GCA_959027765.1	CAUFPL000000000	SAMEA114095896	Hungatella hathewayi
GCA_959019715.1	CAUEQU000000000	SAMEA114095636	Hungatella hathewayi
GCA_959027775.1	CAUFPS000000000	SAMEA114095917	Kluyvera georgiana
GCA_959026935.1	CAUFMV000000000	SAMEA114095886	Ligilactobacillus animalis
GCA_959026675.1	CAUFMN000000000	SAMEA114095709	Limosilactobacillus reuteri
GCA_959018705.1	CAUELZ000000000	SAMEA114095628	Methanobrevibacter smithii
GCA_959026905.1	CAUFNP000000000	SAMEA114095823	Methanobrevibacter smithii
GCA_959027465.1	CAUFPQ000000000	SAMEA114095748	Neglectibacter timonensis
GCA_959019565.1	CAUEPT000000000	SAMEA114095547	Odoribacter splanchnicus
GCA_959026965.1	CAUFNR000000000	SAMEA114095894	Parabacteroides distasonis
GCA_959018585.1	CAUELK000000000	SAMEA114095528	Parabacteroides goldsteinii
GCA_959019525.1	CAUEPB000000000	SAMEA114095515	Parabacteroides merdae
GCA_959019885.1	CAUEQC000000000	SAMEA114095687	Paraprevotella clara
GCA_959018285.1	CAUEKM000000000	SAMEA114095573	Parasutterella excrementihominis
GCA_959018735.1	CAUEMD000000000	SAMEA114095532	Phascolarctobacterium faecium
GCA_959019925.1	CAUEQP000000000	SAMEA114095852	Phascolarctobacterium succinatutens
GCA_959026635.1	CAUFMW000000000	SAMEA114095662	Phocaeicola plebeius
GCA_959027635.1	CAUFPD000000000	SAMEA114095874	Phocaeicola vulgatus
GCA_959019515.1	CAUEPG000000000	SAMEA114095535	Raoultibacter timonensis
GCA_959024645.1	CAUFGP000000000	SAMEA114095920	Roseburia hominis
GCA_959019875.1	CAUEPX000000000	SAMEA114095820	Ruminococcus bromii
GCA_959027715.1	CAUFPO000000000	SAMEA114095876	Ruthenibacterium lactatiformans
GCA_959026865.1	CAUFMZ000000000	SAMEA114095867	Schaalia turicensis
GCA_959018895.1	CAUEMZ000000000	SAMEA114095808	Senegalimassilia anaerobia
GCA_959026975.1	CAUFMX000000000	SAMEA114095922	Streptococcus lutetiensis
GCA_959026695.1	CAUFNM000000000	SAMEA114095589	Streptococcus salivarius
GCA_959018745.1	CAUEMG000000000	SAMEA114095759	Streptococcus thermophilus
GCA_959026705.1	CAUFNL000000000	SAMEA114095761	Turicibacter sanguinis
GCA_959017825.1	CAUEIR000000000	SAMEA114095634	[Clostridium] innocuum
GCA_959027485.1	CAUFPA000000000	SAMEA114095785	[Clostridium] leptum
GCA_959026785.1	CAUFNN000000000	SAMEA114095856	[Eubacterium] siraeum
GCA_959027535.1	CAUFOX000000000	SAMEA114095840	[Ruminococcus] lactaris
GCA_959026525.1	CAUFLU000000000	SAMEA114095524	[Ruminococcus] torques
GCA_959019595.2	CAUEPE000000000	SAMEA114095596	uncultured Acetobacter sp.
GCA_959017875.1	CAUEIW000000000	SAMEA114095610	uncultured Adlercreutzia sp.
GCA_959027225.1	CAUFOO000000000	SAMEA114095542	uncultured Agathobaculum sp.
GCA_959018035.1	CAUEJQ000000000	SAMEA114095717	uncultured Alistipes sp.
GCA_959019405.1	CAUEPF000000000	SAMEA114095765	uncultured Anaeromassilibacillus sp.
GCA_959026755.1	CAUFMY000000000	SAMEA114095804	uncultured Anaerotruncus sp.
GCA_959018665.1	CAUELY000000000	SAMEA114095679	uncultured Bacteroidales bacterium
GCA_959018655.1	CAUELW000000000	SAMEA114095534	uncultured Blautia sp.
GCA_959018565.1	CAUELJ000000000	SAMEA114095529	uncultured Blautia sp.
GCA_959019425.1	CAUEOP000000000	SAMEA114095790	uncultured Blautia sp.
GCA_959018265.1	CAUEKD000000000	SAMEA114095602	uncultured Blautia sp.
GCA_959019415.1	CAUEOV000000000	SAMEA114095752	uncultured Blautia sp.
GCA_959026795.1	CAUFND000000000	SAMEA114095701	uncultured Butyricicoccus sp.
GCA_959017775.1	CAUEIJ000000000	SAMEA114095640	uncultured Clostridia bacterium
GCA_959027245.1	CAUFOM000000000	SAMEA114095561	uncultured Clostridia bacterium
GCA_959019865.1	CAUEQE000000000	SAMEA114095838	uncultured Clostridiaceae bacterium
GCA_959026645.1	CAUFMF000000000	SAMEA114095684	uncultured Clostridium sp.
GCA_959019535.1	CAUEOS000000000	SAMEA114095578	uncultured Clostridium sp.
GCA_959027395.1	CAUFQU000000000	SAMEA114095674	uncultured Clostridium sp.
GCA_959027495.1	CAUFOV000000000	SAMEA114095815	uncultured Clostridium sp.
GCA_959028445.1	CAUFRY000000000	SAMEA114095834	uncultured Collinsella sp.
GCA_959027945.1	CAUFRO000000000	SAMEA114095908	uncultured Collinsella sp.
GCA_959019945.1	CAUEQD000000000	SAMEA114095883	uncultured Collinsella sp.
GCA_959019775.1	CAUEPS000000000	SAMEA114095654	uncultured Collinsella sp.
GCA_959026535.1	CAUFMB000000000	SAMEA114095549	uncultured Collinsella sp.
GCA_959026545.1	CAUFLV000000000	SAMEA114095558	uncultured Collinsella sp.
GCA_959026725.1	CAUFMG000000000	SAMEA114095757	uncultured Collinsella sp.
GCA_959017765.1	CAUEIK000000000	SAMEA114095620	uncultured Collinsella sp.
GCA_959020035.1	CAUEQX000000000	SAMEA114095914	uncultured Collinsella sp.
GCA_959020075.1	CAUEQK000000000	SAMEA114095791	uncultured Collinsella sp.
GCA_959018915.1	CAUENF000000000	SAMEA114095784	uncultured Coprococcus sp.
GCA_959027615.1	CAUFPY000000000	SAMEA114095850	uncultured Coprococcus sp.
GCA_959019755.1	CAUEPW000000000	SAMEA114095694	uncultured Cryptobacterium sp.
GCA_959018765.1	CAUEMI000000000	SAMEA114095545	uncultured Dorea sp.
GCA_959026745.1	CAUFMU000000000	SAMEA114095778	uncultured Dorea sp.
GCA_959019385.1	CAUEOG000000000	SAMEA114095730	uncultured Eggerthella sp.
GCA_959019555.1	CAUEOU000000000	SAMEA114095538	uncultured Eggerthella sp.
GCA_959019485.1	CAUEOI000000000	SAMEA114095536	uncultured Eggerthella sp.
GCA_959018475.1	CAUELL000000000	SAMEA114095523	uncultured Emergencia sp.
GCA_959018905.1	CAUENB000000000	SAMEA114095800	uncultured Erysipelotrichaceae bacterium
GCA_959019505.1	CAUEOQ000000000	SAMEA114095521	uncultured Erysipelotrichaceae bacterium
GCA_959019445.1	CAUEOT000000000	SAMEA114095772	uncultured Eubacteriaceae bacterium
GCA_959017945.1	CAUEJF000000000	SAMEA114095744	uncultured Eubacteriaceae bacterium
GCA_959027275.1	CAUFOH000000000	SAMEA114095616	uncultured Eubacteriaceae bacterium
GCA_959022475.1	CAUEZG000000000	SAMEA114095832	uncultured Eubacteriales bacterium
GCA_959017785.1	CAUEIN000000000	SAMEA114095621	uncultured Eubacteriales bacterium
GCA_959028175.1	CAUFRU000000000	SAMEA114095796	uncultured Eubacteriales bacterium
GCA_959027845.1	CAUFQV000000000	SAMEA114095746	uncultured Eubacteriales bacterium
GCA_959027805.1	CAUFQP000000000	SAMEA114095739	uncultured Eubacteriales bacterium
GCA_959027675.1	CAUFQA000000000	SAMEA114095821	uncultured Eubacteriales bacterium
GCA_959027265.1	CAUFOB000000000	SAMEA114095585	uncultured Eubacteriales bacterium
GCA_959026735.1	CAUFMT000000000	SAMEA114095715	uncultured Eubacteriales bacterium
GCA_959026825.1	CAUFMP000000000	SAMEA114095872	uncultured Eubacteriales bacterium
GCA_959019475.1	CAUEOL000000000	SAMEA114095533	uncultured Eubacteriales bacterium
GCA_959019455.1	CAUEOM000000000	SAMEA114095764	uncultured Eubacteriales bacterium
GCA_959019395.1	CAUEOJ000000000	SAMEA114095742	uncultured Eubacteriales bacterium
GCA_959019365.1	CAUEON000000000	SAMEA114095731	uncultured Eubacteriales bacterium
GCA_959019935.1	CAUEQQ000000000	SAMEA114095869	uncultured Eubacteriales bacterium
GCA_959019655.1	CAUEPO000000000	SAMEA114095618	uncultured Eubacteriales bacterium
GCA_959019675.1	CAUEPM000000000	SAMEA114095626	uncultured Eubacteriales bacterium
GCA_959026495.1	CAUFLZ000000000	SAMEA114095531	uncultured Eubacteriales bacterium
GCA_959024125.1	CAUFEC000000000	SAMEA114095525	uncultured Eubacteriales bacterium
GCA_959017805.1	CAUEIM000000000	SAMEA114095606	uncultured Eubacteriales bacterium
GCA_959018545.1	CAUELQ000000000	SAMEA114095681	uncultured Eubacteriales bacterium
GCA_959018645.1	CAUELS000000000	SAMEA114095733	uncultured Eubacteriales bacterium
GCA_959018865.1	CAUEMT000000000	SAMEA114095812	uncultured Eubacteriales bacterium
GCA_959019795.1	CAUEPP000000000	SAMEA114095810	uncultured Eubacteriales bacterium
GCA_959019765.1	CAUEPN000000000	SAMEA114095677	uncultured Eubacteriales bacterium
GCA_959026815.1	CAUFNV000000000	SAMEA114095862	uncultured Eubacteriales bacterium
GCA_959026565.1	CAUFLY000000000	SAMEA114095568	uncultured Eubacteriales bacterium
GCA_959027085.1	CAUFOC000000000	SAMEA114095794	uncultured Eubacteriales bacterium
GCA_959027075.1	CAUFQN000000000	SAMEA114095846	uncultured Eubacteriales bacterium
GCA_959026915.1	CAUFMS000000000	SAMEA114095899	uncultured Eubacteriales bacterium
GCA_959018295.1	CAUEKS000000000	SAMEA114095728	uncultured Eubacterium sp.
GCA_959019845.1	CAUEQB000000000	SAMEA114095711	uncultured Eubacterium sp.
GCA_959019575.1	CAUEOW000000000	SAMEA114095554	uncultured Faecalibacterium sp.
GCA_959018535.1	CAUELO000000000	SAMEA114095552	uncultured Faecalibacterium sp.
GCA_959026475.1	CAUFMH000000000	SAMEA114095539	uncultured Firmicutes bacterium
GCA_959019355.1	CAUEOE000000000	SAMEA114095723	uncultured Firmicutes bacterium
GCA_959023945.1	CAUFDH000000000	SAMEA114095520	uncultured Firmicutes bacterium
GCA_959019605.1	CAUEPC000000000	SAMEA114095584	uncultured Firmicutes bacterium
GCA_959027585.1	CAUFPI000000000	SAMEA114095842	uncultured Firmicutes bacterium
GCA_959018215.1	CAUEKL000000000	SAMEA114095698	uncultured Gemmiger sp.
GCA_959018095.1	CAUEJR000000000	SAMEA114095629	uncultured Lachnoclostridium sp.
GCA_959018465.1	CAUELC000000000	SAMEA114095580	uncultured Lachnospiraceae bacterium
GCA_959027695.1	CAUFPT000000000	SAMEA114095879	uncultured Lachnospiraceae bacterium
GCA_959027745.1	CAUFRP000000000	SAMEA114095860	uncultured Lachnospiraceae bacterium
GCA_959027525.1	CAUFOY000000000	SAMEA114095779	uncultured Lachnospiraceae bacterium
GCA_959027655.1	CAUFPH000000000	SAMEA114095877	uncultured Lachnospiraceae bacterium
GCA_959027365.1	CAUFPC000000000	SAMEA114095713	uncultured Lachnospiraceae bacterium
GCA_959027335.1	CAUFOL000000000	SAMEA114095673	uncultured Lachnospiraceae bacterium
GCA_959026845.1	CAUFNK000000000	SAMEA114095691	uncultured Lachnospiraceae bacterium
GCA_959026765.1	CAUFMR000000000	SAMEA114095848	uncultured Lachnospiraceae bacterium
GCA_959019645.1	CAUERL000000000	SAMEA114095592	uncultured Lachnospiraceae bacterium
GCA_959019725.1	CAUEQG000000000	SAMEA114095656	uncultured Lachnospiraceae bacterium
GCA_959026465.1	CAUFLT000000000	SAMEA114095537	uncultured Lachnospiraceae bacterium
GCA_959023835.1	CAUFDQ000000000	SAMEA114095517	uncultured Lachnospiraceae bacterium
GCA_959018135.1	CAUEJZ000000000	SAMEA114095705	uncultured Muribaculaceae bacterium
GCA_959026955.1	CAUFNU000000000	SAMEA114095890	uncultured Oscillibacter sp.
GCA_959027575.1	CAUFOT000000000	SAMEA114095828	uncultured Oscillibacter sp.
GCA_959019915.1	CAUEQL000000000	SAMEA114095858	uncultured Oscillibacter sp.
GCA_959019835.1	CAUEPU000000000	SAMEA114095830	uncultured Oscillospiraceae bacterium
GCA_959022535.1	CAUEZS000000000	SAMEA114095882	uncultured Oscillospiraceae bacterium
GCA_959017855.1	CAUEIV000000000	SAMEA114095527	uncultured Oscillospiraceae bacterium
GCA_959027625.1	CAUFOZ000000000	SAMEA114095864	uncultured Oscillospiraceae bacterium
GCA_959027515.1	CAUFQF000000000	SAMEA114095737	uncultured Oscillospiraceae bacterium
GCA_959027455.1	CAUFPK000000000	SAMEA114095707	uncultured Oscillospiraceae bacterium
GCA_959027345.1	CAUFOQ000000000	SAMEA114095669	uncultured Oscillospiraceae bacterium
GCA_959026715.1	CAUFMQ000000000	SAMEA114095767	uncultured Oscillospiraceae bacterium
GCA_959026805.1	CAUFMJ000000000	SAMEA114095781	uncultured Oscillospiraceae bacterium
GCA_959027175.1	CAUFNY000000000	SAMEA114095526	uncultured Oscillospiraceae bacterium
GCA_959018255.1	CAUEKB000000000	SAMEA114095726	uncultured Oscillospiraceae bacterium
GCA_959019465.1	CAUEOX000000000	SAMEA114095774	uncultured Oscillospiraceae bacterium
GCA_959027375.1	CAUFPR000000000	SAMEA114095658	uncultured Phascolarctobacterium sp.
GCA_959027605.1	CAUFPX000000000	SAMEA114095844	uncultured Prevotella sp.
GCA_959027315.1	CAUFOF000000000	SAMEA114095582	uncultured Prevotellaceae bacterium
GCA_959026835.1	CAUFNT000000000	SAMEA114095787	uncultured Romboutsia sp.
GCA_959027785.1	CAUFPJ000000000	SAMEA114095902	uncultured Roseburia sp.
GCA_959027445.1	CAUFOU000000000	SAMEA114095721	uncultured Roseburia sp.
GCA_959022525.1	CAUEYS000000000	SAMEA114095910	uncultured Ruminococcus sp.
GCA_959022505.1	CAUEZC000000000	SAMEA114095866	uncultured Ruminococcus sp.
GCA_959026665.1	CAUFMK000000000	SAMEA114095564	uncultured Ruminococcus sp.
GCA_959019955.1	CAUEQN000000000	SAMEA114095904	uncultured Ruminococcus sp.
GCA_959027725.1	CAUFPZ000000000	SAMEA114095905	uncultured Ruminococcus sp.
GCA_959017745.1	CAUEII000000000	SAMEA114095646	uncultured Slackia sp.
GCA_959019545.1	CAUEPA000000000	SAMEA114095572	uncultured Streptococcus sp.
GCA_959027425.1	CAUFON000000000	SAMEA114095756	uncultured Subdoligranulum sp.
GCA_959018695.1	CAUELV000000000	SAMEA114095556	uncultured Succiniclasticum sp.
GCA_959019735.1	CAUEQA000000000	SAMEA114095670	uncultured Sutterella sp.
GCA_959026615.1	CAUFMM000000000	SAMEA114095652	uncultured Sutterella sp.
GCA_959017735.1	CAUEIO000000000	SAMEA114095650	uncultured Sutterellaceae bacterium
GCA_959022565.1	CAUEZJ000000000	SAMEA114095915	uncultured Veillonella sp.

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EMG produced TPA metagenomics assembly of PRJNA866654 data set (Exploring gut microbiome in predicting efficacy of immuno-therapy in non-small cell lung cancer).

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