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Accession: PRJNA953663 ID: 953663

The complete sequence of a rice reference genome

We here firstly assembled a complete genome sequence of the rice reference genome (Nipponbare), named T2T-NIP, derived from a total of 36 Gb Hi-C dataset, 1043 Gb PacBio HIFI reads, 173 Gb Nanopore ONT reads, 23 Gb Illumina Paired-End reads, 11 Gb Illumina Paired-End RNA-Seq reads and 10 Gb Full-length RNA-Seq reads. More...
AccessionPRJNA953663
Data TypeRaw sequence reads
ScopeMultispecies
Publications (total 5)
  • Shang L et al., "A complete assembly of the rice Nipponbare reference genome.", Mol Plant, 2023 Aug 7;16(8):1232-1236
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SubmissionRegistration date: 9-Apr-2023
Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (Genomic DNA)12
SRA Experiments10
Publications
PubMed5
PMC1
Other datasets
BioSample4
Assembly1
SRA Data Details
ParameterValue
Data volume, Gbases539
Data volume, Tbytes0.36
Related Project Category: RefseqGenbank
PRJNA1123306 : Refseq

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