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Genome Information for Squalius cephalus
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This project collects the sequencing data and assemblies generated for Squalius cephalus, common name European chub, to facilitate genome assembly and annotation as part of the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The data under this project are made available subject to the Darwin Tree of Life Open Data Release Policy (https://www.darwintreeoflife.org/project-resources/).
| Accession | PRJEB59952 |
| Type | Umbrella project |
| Organism | Squalius cephalus[Taxonomy ID: 8284] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Leuciscinae; Squalius; Squalius cephalus |
| Submission | Registration date: 16-Feb-2023
WELLCOME SANGER INSTITUTE |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 28 |
| WGS master | 2 |
| Genomic DNA | 26 |
| SRA Experiments | 4 |
| Other datasets |
| BioSample | 2 |
| Assembly | 2 |
fSquCep encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds Total |
1
1
2
|
BioProject
accession | Assembly
level | Organism | Title |
|---|
| PRJEB60238 | Scaffolds | Squalius cephalus | Squalius cephalus (European chub) genome assembly, fSquCep2, alternate haplotype (WELLCOME SANGER INSTITUTE) | | PRJEB60239 | Chromosomes | Squalius cephalus | Squalius cephalus (European chub) genome assembly, fSquCep2 (WELLCOME SANGER INSTITUTE) |
|
| Other | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJEB59951 | Squalius cephalus | Squalius cephalus (European chub), genomic and transcriptomic data (WELLCOME SANGER INSTITUTE) |
|