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Genome Information for Pangasianodon hypophthalmus
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The striped catfish (Pangasianodon hypophthalmus) is a species of shark catfish (family Pangasiidae) native to the rivers of Southeast Asia. It has some morphological features that make it look like a shark. It is heavily cultivated as a food source, and endangered of extinction in the wild. This genome is from an animal collected by Joost Woltering and Axel Meyer from a fish market in Frankfurt, Germany, and likely from a breeding agriculture source. The sample was used to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing was conducted at the the Max Planck Dresden Genome Center in Germany, conducted and coordinated by Gene Myers, Sylke Winkler, and Thomas Brown.
Accession | PRJNA915404 |
Type | Umbrella project |
Organism | Pangasianodon hypophthalmus[Taxonomy ID: 310915] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon; Pangasianodon hypophthalmus |
Submission | Registration date: 23-Dec-2022 Vertebrate Genomes Project |
Relevance | Reference genome |
Project Data:
Resource Name | Number of Links |
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Sequence data |
Nucleotide (total) | 53980 |
WGS master | 2 |
Transcript | 53859 |
SRA Experiments | 3 |
Protein Sequences | 47335 |
Publications |
PubMed | 1 |
PMC | 1 |
Other datasets |
BioSample | 1 |
Assembly | 2 |
This project encompasses the following 4 sub-projects:
Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total | 2 1 1 4
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BioProject accession | Assembly level | Name | Title |
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PRJNA914796 | Chromosomes | Pangasianodon hypophthalmus | Pangasianodon hypophthalmus (striped catfish) genome, fPanHyp1, primary haplotype (Vertebrate Genomes Project) | PRJNA914798 | Scaffolds | Pangasianodon hypophthalmus | Pangasianodon hypophthalmus (striped catfish) genome, fPanHyp1, alternate haplotype (Vertebrate Genomes Project) | PRJNA926961 | Chromosomes | Pangasianodon hypophthalmus | Pangasianodon hypophthalmus (striped catfish) fPanHyp1, primary haplotype, RefSeq BioProject (NCBI) | PRJNA1008549 | SRA or Trace | Pangasianodon hypophthalmus (striped catfish) genome, fPanHyp1, sequence data. | Pangasianodon hypophthalmus (striped catfish) genome, fPanHyp1, sequence data. (G10K) |
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