See
Genome Information for Haemorhous mexicanus
Navigate Up
Navigate Across
The house finch (Haemorhous mexicanus) is a bird in the finch family Fringillidae. It is native to western North America and has been introduced to the eastern half of the continent and Hawaii. This sample was procured by Amberleigh Henschen and used to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). The project was coordinated by James S. Adelman of the University of Memphis. Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.
| Accession | PRJNA915091 |
| Type | Umbrella project |
| Organism | Haemorhous mexicanus[Taxonomy ID: 30427] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Haemorhous; Haemorhous mexicanus |
| Submission | Registration date: 22-Dec-2022
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 43495 |
| WGS master | 2 |
| Transcript | 43228 |
| SRA Experiments | 5 |
| Protein Sequences | 37875 |
| Publications |
| PubMed | 2 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total |
2
1
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA839499 | Chromosomes | Haemorhous mexicanus | Haemorhous mexicanus (house finch) genome, bHaeMex1, primary haplotype (Vertebrate Genomes Project) | | PRJNA839498 | Scaffolds | Haemorhous mexicanus | Haemorhous mexicanus (house finch) genome, bHaeMex1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA1018583 | Chromosomes | Haemorhous mexicanus | Haemorhous mexicanus isolate:bHaeMex1 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1005622 | SRA or Trace | Haemorhous mexicanus (house finch) genome, bHaeMex1, sequence data | Haemorhous mexicanus (house finch) genome, bHaeMex1, sequence data (G10K) |
|