ID 863834 - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Accession: PRJEB55079 ID: 863834

EMG produced TPA metagenomics assembly of PRJNA494922 data set (Characterisation of the UK honey bee metagenome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA494922, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Insecta.

Accession	PRJEB55079
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 30-Jul-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	2416
WGS master	22
Publications
PubMed	1
PMC	1
Other datasets
BioSample	22
Assembly	22

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

22
22

Assembly	WGS	BioSample	Taxonomy
GCA_946698725.1	CAMPDT000000000	SAMEA110751598	Bartonella apis
GCA_946696955.1	CAMPDH000000000	SAMEA110751599	Bartonella apis
GCA_946699595.1	CAMPDY000000000	SAMEA110751589	Bartonella apis
GCA_946697675.1	CAMPDL000000000	SAMEA110751593	Bifidobacterium asteroides
GCA_946696765.1	CAMPDF000000000	SAMEA110751602	Cedecea davisae
GCA_946699615.1	CAMPDX000000000	SAMEA110751583	Frischella perrara
GCA_946698115.1	CAMPDN000000000	SAMEA110751590	Gilliamella apicola
GCA_946698125.1	CAMPDM000000000	SAMEA110751597	Lactobacillus apis
GCA_946698435.1	CAMPDQ000000000	SAMEA110751587	Serratia fonticola
GCA_946698215.1	CAMPDP000000000	SAMEA110751584	Snodgrassella alvi
GCA_946698715.1	CAMPDR000000000	SAMEA110751591	uncultured Apibacter sp.
GCA_946697005.1	CAMPDJ000000000	SAMEA110751588	uncultured Bartonella sp.
GCA_946696845.1	CAMPDG000000000	SAMEA110751603	uncultured Commensalibacter sp.
GCA_946699245.1	CAMPDU000000000	SAMEA110751596	uncultured Commensalibacter sp.
GCA_946699565.1	CAMPDW000000000	SAMEA110751586	uncultured Commensalibacter sp.
GCA_946696685.1	CAMPDD000000000	SAMEA110751600	uncultured Lactobacillus sp.
GCA_946696455.1	CAMPDC000000000	SAMEA110751595	uncultured Lactobacillus sp.
GCA_946697305.1	CAMPDK000000000	SAMEA110751601	uncultured Lactobacillus sp.
GCA_946697075.1	CAMPDI000000000	SAMEA110751594	uncultured Lactobacillus sp.
GCA_946698165.1	CAMPDO000000000	SAMEA110751585	uncultured Lactobacillus sp.
GCA_946698755.1	CAMPDS000000000	SAMEA110751592	uncultured Lactobacillus sp.
GCA_946696555.1	CAMPDE000000000	SAMEA110751604	uncultured Ventosimonas sp.

BioProject

Result Filters

Display Settings:

Send to:

EMG produced TPA metagenomics assembly of PRJNA494922 data set (Characterisation of the UK honey bee metagenome).

Supplemental Content

Related information

Recent activity