ID 786194 - BioProject

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Accession: PRJEB49201 ID: 786194

Real-time metagenomics-based diagnosis of community-acquired meningitis: a prospective series, Southern France.

Current Point-Of-Care diagnosis of community-acquired meningitis allowed to identify presence/ absence of the pathogen genome in the CSF. More...

Accession	PRJEB49201
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Submission	Registration date: 4-Dec-2021 IHU - Mediterranee Infection

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	5541
WGS master	30
Genomic DNA	1
Other datasets
BioSample	31
Assembly	27

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

12
15
27

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_923172345.1	CAKLQN000000000	SAMEA10833621	HIN-7	Haemophilus influenzae 10810
GCA_923172715.1	CAKLQV000000000	SAMEA10833639	HIN-27	Haemophilus influenzae KR494
GCA_923174065.1	CAKLQZ000000000	SAMEA10833637	HIN-25	Haemophilus influenzae KR494
GCA_923172585.1	CAKLQQ000000000	SAMEA10833646	HI-5290	Haemophilus influenzae
GCA_923173765.1	CAKLQX000000000	SAMEA10833647	HI-7665	Haemophilus influenzae
GCA_923187015.1	CAKLRJ000000000	SAMEA10833632	HIN-18	Haemophilus influenzae 10810
GCA_923174355.1	CAKLRB000000000	SAMEA10833640	LMN-28	Listeria monocytogenes str. Scott A
GCA_923172565.1	CAKLQS000000000	SAMEA10833619	LMN-5	Listeria monocytogenes str. Scott A
GCA_923187405.1	CAKLRL000000000	SAMEA10833654	NM-4859	Neisseria meningitidis M04-240196
GCA_923184405.1	CAKLRD000000000	SAMEA10833651	NM-1853	Neisseria meningitidis
GCA_923172605.1	CAKLQR000000000	SAMEA10833622	NMN-8	Neisseria meningitidis
GCA_923172645.1	CAKLQU000000000	SAMEA10833645	NM-1495	Neisseria meningitidis
GCA_923172355.1	CAKLQO000000000	SAMEA10833628	NMN-14	Neisseria meningitidis 053442
GCA_923174315.1	CAKLRA000000000	SAMEA10833644	NM-0534	Neisseria meningitidis
GCA_923173235.1	CAKLQW000000000	SAMEA10833649	SA-9397	Staphylococcus aureus subsp. aureus TCH60
GCA_923256795.1	CAKLRM000000000	SAMEA10833615	SPN-1	Streptococcus pneumoniae R6
GCA_923186255.1	CAKLRF000000000	SAMEA10833655	SP-0440	Streptococcus pneumoniae AP200
GCA_923186265.1	CAKLRG000000000	SAMEA10833656	SP-8632	Streptococcus pneumoniae SPNA45
GCA_923186865.1	CAKLRI000000000	SAMEA10833657	SP-1725	Streptococcus pneumoniae AP200
GCA_923186635.1	CAKLRH000000000	SAMEA10833661	SP-8159	Streptococcus pneumoniae SPNA45
GCA_923186305.1	CAKLRE000000000	SAMEA10833653	SP-1343	Streptococcus pneumoniae AP200
GCA_923187375.1	CAKLRK000000000	SAMEA10833659	SP-5439	Streptococcus pneumoniae AP200
GCA_923172285.1	CAKLQI000000000	SAMEA10833650	SP-0631	Streptococcus pneumoniae
GCA_923172325.1	CAKLQL000000000	SAMEA10833642	SP7826	Streptococcus pneumoniae
GCA_923172305.1	CAKLQJ000000000	SAMEA10833638	SPN-26	Streptococcus pneumoniae 670-6B
GCA_923172295.1	CAKLQK000000000	SAMEA10833631	SPN-17	Streptococcus pneumoniae AP200
GCA_923172635.1	CAKLQT000000000	SAMEA10833618	SPN-4	Streptococcus pneumoniae SPNA45

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Real-time metagenomics-based diagnosis of community-acquired meningitis: a prospective series, Southern France.

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