ID 785542 - BioProject

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Accession: PRJNA785542 ID: 785542

Human, animals, environment genome sequencing and assembly

The aim of this project is a construction an antimicrobial resistance epidemiology program in One Health context

Accession	PRJNA785542
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications (total 4) Less...	More... Published online: Conte D et al., "Characterization of CTX-M enzymes, quinolone resistance determinants, and antimicrobial residues from hospital sewage, wastewater treatment plant, and river water", Ecotoxicology and Environmental Safety, 2017;136:62-69 Published online: Conte D et al., "Antimicrobial resistance in Aeromonas species isolated from aquatic environments in Brazil", Journal of Applied Microbiology, 2020;131(1):169-181 Published online: Conte D et al., "Novel Insights into bla _GES Mobilome Reveal Extensive Genetic Variation in Hospital Effluents", Microbiology Spectrum, 2022;10(4) Published online: Kussek P et al., "Lower airway microbiota and decreasing lung function in young Brazilian cystic fibrosis patients with pulmonary Staphylococcus and Pseudomonas infection", PLOS ONE, 2022;17(8) Less...
Submission	Registration date: 2-Dec-2021 Instituto de Pesquisa Pele Pequeno Principe
Related Resources	Research Gate Lab link
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	93
SRA Experiments	80
Other datasets
BioSample	151
Assembly	93

Assembly details:

Download

Assembly level

Number of Assemblies

Scaffold

Contig

Total

30
63
93

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_035013105.1	JAYGOJ000000000	SAMN38842750	36v	Aeromonas caviae
GCA_035013085.1	JAYGOO000000000	SAMN38842745	62i	Aeromonas caviae
GCA_035013065.1	JAYGOL000000000	SAMN38842748	6v	Aeromonas caviae
GCA_035013045.1	JAYGOM000000000	SAMN38842747	1v	Aeromonas caviae
GCA_035013025.1	JAYGOK000000000	SAMN38842749	12v	Aeromonas caviae
GCA_035013005.1	JAYGON000000000	SAMN38842746	65i	Aeromonas caviae
GCA_024260265.1	JANCKN000000000	SAMN25042578	368	Clostridioides difficile
GCA_024260025.1	JANCLD000000000	SAMN25042598	413	Clostridioides difficile
GCA_024259985.1	JANCLE000000000	SAMN26135217	164	Clostridioides difficile
GCA_024259995.1	JANCLG000000000	SAMN24961113	98	Clostridioides difficile
GCA_024259965.1	JANCLH000000000	SAMN24961115	429	Clostridioides difficile
GCA_024259945.1	JANCLI000000000	SAMN24961116	442	Clostridioides difficile
GCA_024259925.1	JANCLJ000000000	SAMN24961117	453	Clostridioides difficile
GCA_024262405.1	JANCKE000000000	SAMN25042569	258	Clostridioides difficile
GCA_024262365.1	JANCKW000000000	SAMN25042590	27	Clostridioides difficile
GCA_024262385.1	JANCKP000000000	SAMN25042580	394	Clostridioides difficile
GCA_024262315.1	JANCLA000000000	SAMN25042594	277	Clostridioides difficile
GCA_024262325.1	JANCKJ000000000	SAMN25042574	311	Clostridioides difficile
GCA_024262305.1	JANCKO000000000	SAMN25042579	375	Clostridioides difficile
GCA_024262205.1	JANCLF000000000	SAMN26135218	279	Clostridioides difficile
GCA_024262265.1	JANCLK000000000	SAMN24961118	463	Clostridioides difficile
GCA_024262255.1	JANCLC000000000	SAMN25042597	396	Clostridioides difficile
GCA_024260515.1	JANCJY000000000	SAMN25042563	23	Clostridioides difficile
GCA_024260485.1	JANCKA000000000	SAMN25042565	120	Clostridioides difficile
GCA_024260465.1	JANCJZ000000000	SAMN25042564	76	Clostridioides difficile
GCA_024260445.1	JANCKB000000000	SAMN25042566	171	Clostridioides difficile
GCA_024260425.1	JANCKC000000000	SAMN25042567	212	Clostridioides difficile
GCA_024260405.1	JANCKD000000000	SAMN25042568	242	Clostridioides difficile
GCA_024260385.1	JANCKF000000000	SAMN25042570	266	Clostridioides difficile
GCA_024260365.1	JANCKG000000000	SAMN25042571	295	Clostridioides difficile
GCA_024260345.1	JANCKH000000000	SAMN25042572	298	Clostridioides difficile
GCA_024260325.1	JANCKK000000000	SAMN25042575	335	Clostridioides difficile
GCA_024260295.1	JANCKI000000000	SAMN25042573	304	Clostridioides difficile
GCA_024260285.1	JANCKL000000000	SAMN25042576	342	Clostridioides difficile
GCA_024260245.1	JANCKM000000000	SAMN25042577	349	Clostridioides difficile
GCA_024260215.1	JANCKQ000000000	SAMN25042581	402	Clostridioides difficile
GCA_024260205.1	JANCKR000000000	SAMN25042582	405	Clostridioides difficile
GCA_024260185.1	JANCKS000000000	SAMN25042583	425	Clostridioides difficile
GCA_024260155.1	JANCKU000000000	SAMN25042585	271	Clostridioides difficile
GCA_024260145.1	JANCKV000000000	SAMN25042586	284	Clostridioides difficile
GCA_024260125.1	JANCKT000000000	SAMN25042584	97	Clostridioides difficile
GCA_024260105.1	JANCKX000000000	SAMN25042591	91	Clostridioides difficile
GCA_024260085.1	JANCKY000000000	SAMN25042592	103	Clostridioides difficile
GCA_024260055.1	JANCKZ000000000	SAMN25042593	251	Clostridioides difficile
GCA_024260045.1	JANCLB000000000	SAMN25042596	384	Clostridioides difficile
GCA_030346835.1	JAUALA000000000	SAMN34171215	Efm28	Enterococcus faecium
GCA_030346955.1	JAUAKZ000000000	SAMN34171214	Efm10	Enterococcus faecium
GCA_030346905.1	JAUAKY000000000	SAMN34171213	Efm9	Enterococcus faecium
GCA_030026945.2	JASEKY000000000	SAMN34535840	Kpn10	Klebsiella pneumoniae
GCA_023096265.1	JALMLA000000000	SAMN26195797	M009b	Neisseria gonorrhoeae
GCA_023096245.1	JALMLB000000000	SAMN26195798	M043b	Neisseria gonorrhoeae
GCA_023096225.1	JALMLC000000000	SAMN26195799	M107b	Neisseria gonorrhoeae
GCA_023096205.1	JALMLD000000000	SAMN26195800	M110b	Neisseria gonorrhoeae
GCA_023096165.1	JALMLH000000000	SAMN26195804	M043a	Neisseria gonorrhoeae
GCA_023096155.1	JALMLG000000000	SAMN26195803	M009a	Neisseria gonorrhoeae
GCA_023096145.1	JALMLE000000000	SAMN26195801	M111b	Neisseria gonorrhoeae
GCA_023096125.1	JALMLF000000000	SAMN26195802	M128b	Neisseria gonorrhoeae
GCA_023096105.1	JALMLI000000000	SAMN26195805	M107a	Neisseria gonorrhoeae
GCA_023096085.1	JALMLN000000000	SAMN26195810	WHOFa	Neisseria gonorrhoeae
GCA_023096065.1	JALMLJ000000000	SAMN26195806	M110a	Neisseria gonorrhoeae
GCA_023096045.1	JALMLM000000000	SAMN26195809	WHOYa	Neisseria gonorrhoeae
GCA_023096025.1	JALMLL000000000	SAMN26195808	M128a	Neisseria gonorrhoeae
GCA_023096005.1	JALMLK000000000	SAMN26195807	M111a	Neisseria gonorrhoeae
GCA_030237105.1	JASJSL000000000	SAMN35084622	Smal1	Stenotrophomonas geniculata
GCA_030236965.1	JASJSR000000000	SAMN35084932	Smal5	Stenotrophomonas maltophilia
GCA_030237055.1	JASJSJ000000000	SAMN35084944	Smal28	Stenotrophomonas maltophilia
GCA_030237125.1	JASJSO000000000	SAMN35084930	Smal3	Stenotrophomonas maltophilia
GCA_030237155.1	JASJSV000000000	SAMN35084929	Smal2	Stenotrophomonas maltophilia
GCA_030236935.1	JASJSE000000000	SAMN35084949	Smal36	Stenotrophomonas maltophilia
GCA_030236885.1	JASJST000000000	SAMN35084940	Smal18	Stenotrophomonas maltophilia
GCA_030236825.1	JASJSS000000000	SAMN35084941	Smal21	Stenotrophomonas maltophilia
GCA_031851375.1	JASKJE000000000	SAMN35084938	Smal16	Stenotrophomonas maltophilia
GCA_033437005.1	JASKMZ000000000	SAMN35084937	Smal15	Stenotrophomonas maltophilia
GCA_033436975.1	JASKMX000000000	SAMN35084950	Smal37	Stenotrophomonas maltophilia
GCA_033436965.1	JASKJC000000000	SAMN35084951	Smal39	Stenotrophomonas maltophilia
GCA_033436945.1	JASKMW000000000	SAMN35084952	Smal42	Stenotrophomonas maltophilia
GCA_030236845.1	JASJSM000000000	SAMN35084935	Smal11	Stenotrophomonas maltophilia group sp. Smal11
GCA_037079935.1	JBAWUK000000000	SAMN35440218	Smal12	Stenotrophomonas maltophilia group sp. Smal12
GCA_030236855.1	JASJSQ000000000	SAMN35084936	Smal13	Stenotrophomonas maltophilia group sp. Smal13
GCA_030237045.1	JASJSU000000000	SAMN35084939	Smal17	Stenotrophomonas maltophilia group sp. Smal17
GCA_030237085.1	JASJSI000000000	SAMN35084945	Smal32	Stenotrophomonas maltophilia group sp. Smal32
GCA_030237025.1	JASJSF000000000	SAMN35084948	Smal35	Stenotrophomonas maltophilia group sp. Smal35
GCA_037079815.1	JBAWUO000000000	SAMN35440222	Smal41	Stenotrophomonas maltophilia group sp. Smal41
GCA_030237005.1	JASJSG000000000	SAMN35084947	Smal34	Stenotrophomonas muris
GCA_030236905.1	JASJSP000000000	SAMN35084933	Smal6	Stenotrophomonas muris
GCA_030234375.1	JASJSH000000000	SAMN35084946	Smal33	Stenotrophomonas muris
GCA_037079825.1	JBAWUN000000000	SAMN35440221	Smal38	Stenotrophomonas muris
GCA_037079915.1	JBAWUL000000000	SAMN35440219	Smal14	Stenotrophomonas muris
GCA_037079895.1	JBAWUM000000000	SAMN35440220	Smal31	Stenotrophomonas muris
GCA_031935545.1	JASKMY000000000	SAMN35084943	Smal24	Stenotrophomonas muris
GCA_030236975.1	JASJSN000000000	SAMN35084931	Smal4	Stenotrophomonas pavanii
GCA_030236925.1	JASJSK000000000	SAMN35084934	Smal10	Stenotrophomonas sepilia
GCA_031935585.1	JASKJD000000000	SAMN35084942	Smal22	Stenotrophomonas sepilia

SRA Data Details

Parameter	Value
Data volume, Gbases	63
Data volume, Mbytes	27189

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