Multiple antimicrobial resistant bacterial isolates (ID 693986) - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Accession: PRJNA693986 ID: 693986

Multiple antimicrobial resistant bacterial isolates

Bacterial Isolate Assemblies for Microbiota Restoration Reduces Antibiotic Resistant Bacteria Gut Colonization in Patients with Recurrent Clostridioides difficile Infection from the Open-Label PUNCH CD Study, Nov 01 '20

These are intermediate data files where rough contigs were assembled from whole genome shotgun sequences of bacterial strains isolated on antimicrobial media.

Accession	PRJNA693986
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Walker RM et al., "Identification of epigenome-wide DNA methylation differences between carriers of APOE ε4 and APOE ε2 alleles.", Genome Med, 2021 Jan 4;13(1):1
Submission	Registration date: 22-Jan-2021 Washington University in St. Louis
NCBI Links	Other raw sequencing data
Related Resources	Original clinical trial
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	39
WGS master	38
Genomic DNA	1
Publications
PubMed	1
PMC	1
Other datasets
BioSample	39
Assembly	38

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

38
38

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_018919595.1	JAHLRD000000000	SAMN19645714	S44_ASV_140	Citrobacter sp. S44_ASV_140
GCA_018919545.1	JAHLRC000000000	SAMN19645715	S46_ASV_140	Citrobacter sp. S46_ASV_140
GCA_018919505.1	JAHLQZ000000000	SAMN19645718	S55_ASV_140	Citrobacter sp. S55_ASV_140
GCA_018919725.1	JAHLRK000000000	SAMN19645707	S18_ASV_15	Enterobacteriaceae bacterium S18_ASV_15
GCA_018919645.1	JAHLRG000000000	SAMN19645711	S22_ASV_15	Enterobacteriaceae bacterium S22_ASV_15
GCA_018919585.1	JAHLRF000000000	SAMN19645712	S29_ASV_15	Enterobacteriaceae bacterium S29_ASV_15
GCA_018919625.1	JAHLRE000000000	SAMN19645713	S32_ASV_15	Enterobacteriaceae bacterium S32_ASV_15
GCA_018919565.1	JAHLRB000000000	SAMN19645716	S5_ASV_15	Enterobacteriaceae bacterium S5_ASV_15
GCA_018920195.1	JAHLSH000000000	SAMN19645684	S101_ASV_20	Enterococcus sp. S101_ASV_20
GCA_018920145.1	JAHLSG000000000	SAMN19645685	S105_ASV_20	Enterococcus sp. S105_ASV_20
GCA_018920165.1	JAHLSF000000000	SAMN19645686	S109_ASV_20	Enterococcus sp. S109_ASV_20
GCA_018920085.1	JAHLSE000000000	SAMN19645687	S113_ASV_20	Enterococcus sp. S113_ASV_20
GCA_018920115.1	JAHLSD000000000	SAMN19645688	S115_ASV_20	Enterococcus sp. S115_ASV_20
GCA_018920105.1	JAHLSC000000000	SAMN19645689	S117_ASV_20	Enterococcus sp. S117_ASV_20
GCA_018920065.1	JAHLSB000000000	SAMN19645690	S123_ASV_20	Enterococcus sp. S123_ASV_20
GCA_018920045.1	JAHLSA000000000	SAMN19645691	S125_ASV_20	Enterococcus sp. S125_ASV_20
GCA_018920005.1	JAHLRZ000000000	SAMN19645692	S129_ASV_20	Enterococcus sp. S129_ASV_20
GCA_018919985.1	JAHLRY000000000	SAMN19645693	S131_ASV_20	Enterococcus sp. S131_ASV_20
GCA_018919965.1	JAHLRX000000000	SAMN19645694	S133_ASV_20	Enterococcus sp. S133_ASV_20
GCA_018919995.1	JAHLRW000000000	SAMN19645695	S141_ASV_20	Enterococcus sp. S141_ASV_20
GCA_018919945.1	JAHLRV000000000	SAMN19645696	S145_ASV_20	Enterococcus sp. S145_ASV_20
GCA_018919875.1	JAHLRU000000000	SAMN19645697	S149_ASV_20	Enterococcus sp. S149_ASV_20
GCA_018919905.1	JAHLRT000000000	SAMN19645698	S153_ASV_20	Enterococcus sp. S153_ASV_20
GCA_018919925.1	JAHLRS000000000	SAMN19645699	S157_ASV_20	Enterococcus sp. S157_ASV_20
GCA_018919865.1	JAHLRR000000000	SAMN19645700	S159_ASV_20	Enterococcus sp. S159_ASV_20
GCA_018919835.1	JAHLRQ000000000	SAMN19645701	S161_ASV_20	Enterococcus sp. S161_ASV_20
GCA_018919805.1	JAHLRP000000000	SAMN19645702	S163_ASV_20	Enterococcus sp. S163_ASV_20
GCA_018919815.1	JAHLRO000000000	SAMN19645703	S165_ASV_20	Enterococcus sp. S165_ASV_20
GCA_018919785.1	JAHLRN000000000	SAMN19645704	S171_ASV_20	Enterococcus sp. S171_ASV_20
GCA_018919765.1	JAHLRM000000000	SAMN19645705	S173_ASV_20	Enterococcus sp. S173_ASV_20
GCA_018919745.1	JAHLRL000000000	SAMN19645706	S177_ASV_20	Enterococcus sp. S177_ASV_20
GCA_018919705.1	JAHLRJ000000000	SAMN19645708	S181_ASV_20	Enterococcus sp. S181_ASV_20
GCA_018919685.1	JAHLRI000000000	SAMN19645709	S183_ASV_20	Enterococcus sp. S183_ASV_20
GCA_018919665.1	JAHLRH000000000	SAMN19645710	S2_ASV_4	Escherichia sp. S2_ASV_4
GCA_018919455.1	JAHLQY000000000	SAMN19645719	S69_ASV_4	Escherichia sp. S69_ASV_4
GCA_018919445.1	JAHLQX000000000	SAMN19645720	S85_ASV_4	Escherichia sp. S85_ASV_4
GCA_018920225.1	JAHLSI000000000	SAMN19645683	S10_ASV_43	Pluralibacter sp. S10_ASV_43
GCA_018919525.1	JAHLRA000000000	SAMN19645717	S54_ASV_43	Pluralibacter sp. S54_ASV_43

BioProject

Result Filters

Display Settings:

Send to:

Multiple antimicrobial resistant bacterial isolates

Bacterial Isolate Assemblies for Microbiota Restoration Reduces Antibiotic Resistant Bacteria Gut Colonization in Patients with Recurrent Clostridioides difficile Infection from the Open-Label PUNCH CD Study, Nov 01 '20

Supplemental Content

Related information

Related Resources

LinkOut to external resources

Recent activity