Escherichia coli (ID 670174) - BioProject

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Accession: PRJNA670174 ID: 670174

Escherichia coli

South Carolina Department of Health Escherichia coli Genome sequencing and assembly

See Genome Information for Escherichia coli

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This project is a component of the GenomeTrakr umbrella project for Escherichia coli and Shigella sp.

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52 additional projects are components of the GenomeTrakr umbrella project for Escherichia coli and Shigella sp..

9382 additional projects are related by organism.

Whole-genome of pure-cultured microbial pathogens as a part of GenomeTrakr

Accession	PRJNA670174
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Submission	Registration date: 3-Apr-2021 South Carolina Dept. of Health & Environmental Control
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	196
SRA Experiments	200
Other datasets
BioSample	200
Assembly	196

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

195
195

Assembly	WGS	BioSample	Infraspecies Id	Taxonomy
GCA_030881205.1	ABLQLX000000000	SAMN34365020	GT23-0214	Escherichia coli
GCA_030881185.1	ABLQLW000000000	SAMN34365022	GT23-0210	Escherichia coli
GCA_030734815.1	ABLPZN000000000	SAMN34365019	GT23-0229	Escherichia coli
GCA_030734775.1	ABLPZL000000000	SAMN34365021	GT23-0221	Escherichia coli
GCA_031503155.1	ABMJJZ000000000	SAMN34405356	GT23-0231	Escherichia coli
GCA_031503125.1	ABMJJY000000000	SAMN34405355	GT23-0230	Escherichia coli
GCA_032269165.1	ABNFDU000000000	SAMN34405358	GT23-0235	Escherichia coli
GCA_032269145.1	ABNFDT000000000	SAMN34405357	GT23-0232	Escherichia coli
GCA_035234575.1	ABPSVP000000000	SAMN39272090	GT24-0174	Escherichia coli
GCA_036364525.1	ABQBTA000000000	SAMN39676200	GT24-0229	Escherichia coli
GCA_036361965.1	ABQBOW000000000	SAMN39676198	GT24-0226	Escherichia coli
GCA_036363105.1	ABQBQJ000000000	SAMN39676195	GT24-0207	Escherichia coli
GCA_036363085.1	ABQBQO000000000	SAMN39676199	GT24-0227	Escherichia coli
GCA_036363045.1	ABQBQL000000000	SAMN39676197	GT24-0223	Escherichia coli
GCA_036361985.1	ABQBOU000000000	SAMN39676194	GT24-0193	Escherichia coli
GCA_036458945.1	ABQDOR000000000	SAMN39732731	GT24-0234	Escherichia coli
GCA_036486545.1	ABQFGM000000000	SAMN39889431	GT24-0256	Escherichia coli
GCA_036240195.1	ABQANG000000000	SAMN39623704	GT24-0189	Escherichia coli
GCA_037062125.1	ABQPHA000000000	SAMN40296318	GT24-0271	Escherichia coli
GCA_037057045.1	ABQOZU000000000	SAMN40296317	GT24-0266	Escherichia coli
GCA_037057665.1	ABQPAY000000000	SAMN40296320	GT24-0273	Escherichia coli
GCA_037064415.1	ABQPLB000000000	SAMN40296319	GT24-0272	Escherichia coli
GCA_036629375.1	ABQGTH000000000	SAMN39945282	GT24-0248	Escherichia coli
GCA_036629385.1	ABQGTJ000000000	SAMN39945283	GT24-0252	Escherichia coli
GCA_036673405.1	ABQGVY000000000	SAMN39676196	GT24-0217	Escherichia coli
GCA_037552365.1	ABRAPL000000000	SAMN40334092	GT24-0283	Escherichia coli
GCA_037078055.1	ABQPUU000000000	SAMN40333611	GT24-0281	Escherichia coli
GCA_037078075.1	ABQPUT000000000	SAMN40333616	GT24-0297	Escherichia coli
GCA_037077455.1	ABQPTQ000000000	SAMN40333617	GT24-0302	Escherichia coli
GCA_037077415.1	ABQPTN000000000	SAMN40333615	GT24-0295	Escherichia coli
GCA_037077395.1	ABQPTO000000000	SAMN40333613	GT24-0288	Escherichia coli
GCA_037099435.1	ABQQBS000000000	SAMN40333614	GT24-0294	Escherichia coli
GCA_034576095.1	ABPPLW000000000	SAMN38982024	GT24-0138	Escherichia coli
GCA_034576155.1	ABPPLZ000000000	SAMN38982026	GT24-0141	Escherichia coli
GCA_034576135.1	ABPPMA000000000	SAMN38982027	GT24-0143	Escherichia coli
GCA_034576115.1	ABPPLY000000000	SAMN38982025	GT24-0139	Escherichia coli
GCA_034848635.1	ABPRHB000000000	SAMN39196082	GT24-0164	Escherichia coli
GCA_032975505.1	ABOGRJ000000000	SAMN35663905	GT23-0411	Escherichia coli
GCA_032977225.1	ABOGUK000000000	SAMN35642878	GT23-0400	Escherichia coli
GCA_032977205.1	ABOGUI000000000	SAMN35642877	GT23-0397	Escherichia coli
GCA_032861555.1	ABOCSN000000000	SAMN35642876	GT23-0394	Escherichia coli
GCA_032859515.1	ABOCOO000000000	SAMN35663904	GT23-0409	Escherichia coli
GCA_032861585.1	ABOCSK000000000	SAMN35642879	GT23-0406	Escherichia coli
GCA_033757675.1	ABOZWK000000000	SAMN34535751	GT23-0204	Escherichia coli
GCA_033757655.1	ABOZWO000000000	SAMN34535753	GT23-0239	Escherichia coli
GCA_033757635.1	ABOZWL000000000	SAMN34535752	GT23-0238	Escherichia coli
GCA_033655645.1	ABOVSD000000000	SAMN35047797	GT23-0287	Escherichia coli
GCA_033656945.1	ABOVSY000000000	SAMN35047798	GT23-0294	Escherichia coli
GCA_033625265.1	ABOUHS000000000	SAMN35105069	GT23-0335	Escherichia coli
GCA_033625245.1	ABOUHR000000000	SAMN35105068	GT23-0326	Escherichia coli
GCA_033569175.1	ABOSYP000000000	SAMN35135007	GT23-0334	Escherichia coli
GCA_033569155.1	ABOSYO000000000	SAMN35135008	GT23-0348	Escherichia coli
GCA_033504535.1	ABOSFL000000000	SAMN35215621	GT23-0345	Escherichia coli
GCA_033504515.1	ABOSFK000000000	SAMN35215622	GT23-0347	Escherichia coli
GCA_033504495.1	ABOSFI000000000	SAMN35215620	GT23-0338	Escherichia coli
GCA_033356835.1	ABOPHY000000000	SAMN35328342	GT23-0359	Escherichia coli
GCA_033357195.1	ABOPIO000000000	SAMN35328347	GT23-0372	Escherichia coli
GCA_033357155.1	ABOPIN000000000	SAMN35328345	GT23-0366	Escherichia coli
GCA_033357135.1	ABOPIP000000000	SAMN35328346	GT23-0370	Escherichia coli
GCA_033357115.1	ABOPIL000000000	SAMN35328344	GT23-0365	Escherichia coli
GCA_033356955.1	ABOPHZ000000000	SAMN35328343	GT23-0362	Escherichia coli
GCA_024855665.1	ABHSTX000000000	SAMN30630102	PNUSAE072276	Escherichia coli
GCA_029825375.1	ABLPBY000000000	SAMN34218082	GT23-0201	Escherichia coli
GCA_029746915.1	ABLNPA000000000	SAMN34178904	GT23-0199	Escherichia coli
GCA_029745715.1	ABLNMU000000000	SAMN34178899	GT23-0183	Escherichia coli
GCA_029745695.1	ABLNMT000000000	SAMN34178893	GT23-0194	Escherichia coli
GCA_029747795.1	ABLNPK000000000	SAMN34178889	GT23-0200	Escherichia coli
GCA_029747765.1	ABLNPL000000000	SAMN34178901	GT23-0186	Escherichia coli
GCA_029745755.1	ABLNMV000000000	SAMN34178895	GT23-0195	Escherichia coli
GCA_029757055.1	ABLODH000000000	SAMN34178891	GT23-0187	Escherichia coli
GCA_029756915.1	ABLODF000000000	SAMN34178897	GT23-0191	Escherichia coli
GCA_029720425.1	ABLMPY000000000	SAMN34156242	GT23-0182	Escherichia coli
GCA_029720345.1	ABLMPV000000000	SAMN34156240	GT23-0168	Escherichia coli
GCA_029713185.1	ABLMJZ000000000	SAMN34156241	GT23-0169	Escherichia coli
GCA_029576095.1	ABLIUN000000000	SAMN34054784	GT23-0044	Escherichia coli
GCA_029576165.1	ABLIUM000000000	SAMN34054778	GT23-0043	Escherichia coli
GCA_029620745.1	ABLKFH000000000	SAMN34111331	GT23-0152	Escherichia coli
GCA_028768085.1	ABKSMV000000000	SAMN33396537	GT23-0020	Escherichia coli
GCA_028768025.1	ABKSMW000000000	SAMN33396538	GT23-0021	Escherichia coli
GCA_028767985.1	ABKSMR000000000	SAMN33396535	GT23-0022	Escherichia coli
GCA_028768325.1	ABKSNF000000000	SAMN33396536	GT23-0023	Escherichia coli
GCA_028768285.1	ABKSNG000000000	SAMN33396534	GT23-0024	Escherichia coli
GCA_028669485.1	ABKRFZ000000000	SAMN33323836	EC23-0011	Escherichia coli
GCA_028669155.1	ABKRFP000000000	SAMN33323839	EC23-0010	Escherichia coli
GCA_028668575.1	ABKRER000000000	SAMN33323842	EC23-0012	Escherichia coli
GCA_017740715.1	AAZTFX000000000	SAMN18205506	PNUSAE068508	Escherichia coli
GCA_017734455.1	AAZSZZ000000000	SAMN18347612	PNUSAE068785	Escherichia coli
GCA_017734415.1	AAZSZY000000000	SAMN18347609	PNUSAE068781	Escherichia coli
GCA_017734395.1	AAZSZV000000000	SAMN18347611	PNUSAE068779	Escherichia coli
GCA_017734375.1	AAZSZX000000000	SAMN18347615	PNUSAE068783	Escherichia coli
GCA_017734435.1	AAZTAB000000000	SAMN18347613	PNUSAE068784	Escherichia coli
GCA_017758625.1	AAZTWN000000000	SAMN18205502	PNUSAE068506	Escherichia coli
GCA_017758305.1	AAZTUO000000000	SAMN18205503	PNUSAE068505	Escherichia coli
GCA_017758265.1	AAZTUP000000000	SAMN18205505	PNUSAE068504	Escherichia coli
GCA_018193755.1	ABAHKD000000000	SAMN18871482	PNUSAE068134	Escherichia coli
GCA_018193735.1	ABAHKA000000000	SAMN18871475	PNUSAE068294	Escherichia coli
GCA_018193715.1	ABAHJX000000000	SAMN18871477	PNUSAE068295	Escherichia coli
GCA_018193675.1	ABAHJY000000000	SAMN18871481	PNUSAE068293	Escherichia coli
GCA_018185975.1	ABAGWE000000000	SAMN18871362	PNUSAE071019	Escherichia coli
GCA_018185935.1	ABAGWH000000000	SAMN18871360	PNUSAE071018	Escherichia coli
GCA_018187295.1	ABAGXV000000000	SAMN18871479	PNUSAE068292	Escherichia coli
GCA_018187275.1	ABAGYB000000000	SAMN18871484	PNUSAE068133	Escherichia coli
GCA_018170315.1	ABAGEK000000000	SAMN18849080	PNUSAE070880	Escherichia coli
GCA_018170335.1	ABAGEH000000000	SAMN18849081	PNUSAE070884	Escherichia coli
GCA_018170515.1	ABAGET000000000	SAMN18849078	PNUSAE070881	Escherichia coli
GCA_018170495.1	ABAGER000000000	SAMN18849083	PNUSAE070873	Escherichia coli
GCA_018170475.1	ABAGEM000000000	SAMN18849077	PNUSAE070875	Escherichia coli
GCA_018170455.1	ABAGES000000000	SAMN18849088	PNUSAE070883	Escherichia coli
GCA_018170435.1	ABAGEP000000000	SAMN18849087	PNUSAE070882	Escherichia coli
GCA_018170415.1	ABAGEJ000000000	SAMN18849090	PNUSAE070885	Escherichia coli
GCA_018170395.1	ABAGEI000000000	SAMN18849086	PNUSAE070872	Escherichia coli
GCA_018170375.1	ABAGEC000000000	SAMN18849082	PNUSAE070876	Escherichia coli
GCA_018171015.1	ABAGEW000000000	SAMN18849089	PNUSAE070879	Escherichia coli
GCA_018170995.1	ABAGEU000000000	SAMN18849079	PNUSAE070874	Escherichia coli
GCA_018170955.1	ABAGEV000000000	SAMN18849084	PNUSAE070878	Escherichia coli
GCA_018019795.1	ABABKU000000000	SAMN18205504	PNUSAE068503	Escherichia coli
GCA_018018615.1	ABABJW000000000	SAMN18347608	PNUSAE068782	Escherichia coli
GCA_018477365.1	ABAODY000000000	SAMN19103041	PNUSAE071924	Escherichia coli
GCA_018477345.1	ABAODP000000000	SAMN19103037	PNUSAE071914	Escherichia coli
GCA_018477325.1	ABAODQ000000000	SAMN19103040	PNUSAE071920	Escherichia coli
GCA_018477305.1	ABAODR000000000	SAMN19103036	PNUSAE071921	Escherichia coli
GCA_018477265.1	ABAODS000000000	SAMN19103039	PNUSAE071919	Escherichia coli
GCA_018477285.1	ABAODU000000000	SAMN19103038	PNUSAE071929	Escherichia coli
GCA_018477245.1	ABAODT000000000	SAMN19103042	PNUSAE071926	Escherichia coli
GCA_018477045.1	ABAODN000000000	SAMN19103044	PNUSAE071916	Escherichia coli
GCA_018477385.1	ABAODW000000000	SAMN19103043	PNUSAE071917	Escherichia coli
GCA_018565685.1	ABAQRZ000000000	SAMN19364994	PNUSAE072275	Escherichia coli
GCA_019205385.1	ABBGPZ000000000	SAMN20173846	PNUSAE076580	Escherichia coli
GCA_019204805.1	ABBGOS000000000	SAMN20173789	PNUSAE076615	Escherichia coli
GCA_019204785.1	ABBGOV000000000	SAMN20174009	PNUSAE076614	Escherichia coli
GCA_019204765.1	ABBGOZ000000000	SAMN20173949	PNUSAE076602	Escherichia coli
GCA_019254475.1	ABBIGU000000000	SAMN20173794	PNUSAE076607	Escherichia coli
GCA_019254465.1	ABBIGW000000000	SAMN20173764	PNUSAE076591	Escherichia coli
GCA_019254445.1	ABBIGV000000000	SAMN20173891	PNUSAE076620	Escherichia coli
GCA_019254425.1	ABBIGX000000000	SAMN20173799	PNUSAE076608	Escherichia coli
GCA_019254405.1	ABBIGR000000000	SAMN20173939	PNUSAE076594	Escherichia coli
GCA_019255105.1	ABBIHY000000000	SAMN20173773	PNUSAE076589	Escherichia coli
GCA_019255085.1	ABBIIB000000000	SAMN20173641	PNUSAE076599	Escherichia coli
GCA_019255065.1	ABBIID000000000	SAMN20173636	PNUSAE076618	Escherichia coli
GCA_019255045.1	ABBIHX000000000	SAMN20173761	PNUSAE076596	Escherichia coli
GCA_019255025.1	ABBIHV000000000	SAMN20173766	PNUSAE076588	Escherichia coli
GCA_019255005.1	ABBIHW000000000	SAMN20173771	PNUSAE076609	Escherichia coli
GCA_019254985.1	ABBIHU000000000	SAMN20173889	PNUSAE076583	Escherichia coli
GCA_019254365.1	ABBIGT000000000	SAMN20173853	PNUSAE076592	Escherichia coli
GCA_019254345.1	ABBIGS000000000	SAMN20173880	PNUSAE076575	Escherichia coli
GCA_019253325.1	ABBIER000000000	SAMN20173796	PNUSAE074382	Escherichia coli
GCA_019253305.1	ABBIET000000000	SAMN20173758	PNUSAE076610	Escherichia coli
GCA_019253285.1	ABBIEJ000000000	SAMN20174013	PNUSAE076617	Escherichia coli
GCA_019253265.1	ABBIEO000000000	SAMN20173791	PNUSAE076600	Escherichia coli
GCA_019253145.1	ABBIEQ000000000	SAMN20173936	PNUSAE076612	Escherichia coli
GCA_019252535.1	ABBIDJ000000000	SAMN20173942	PNUSAE076593	Escherichia coli
GCA_019252505.1	ABBIDI000000000	SAMN20173883	PNUSAE076586	Escherichia coli
GCA_019252445.1	ABBIDG000000000	SAMN20173961	PNUSAE076603	Escherichia coli
GCA_019252085.1	ABBICL000000000	SAMN20173945	PNUSAE076597	Escherichia coli
GCA_019237765.1	ABBHWO000000000	SAMN20176951	PNUSAE076574	Escherichia coli
GCA_019238815.1	ABBHXF000000000	SAMN20173855	PNUSAE076604	Escherichia coli
GCA_019235255.1	ABBHWA000000000	SAMN20173628	PNUSAE076616	Escherichia coli
GCA_019241135.1	ABBHYM000000000	SAMN20173767	PNUSAE076619	Escherichia coli
GCA_019233915.1	ABBHUV000000000	SAMN20173851	PNUSAE076585	Escherichia coli
GCA_019233895.1	ABBHUR000000000	SAMN20173965	PNUSAE076606	Escherichia coli
GCA_019235275.1	ABBHVZ000000000	SAMN20173953	PNUSAE076590	Escherichia coli
GCA_019235215.1	ABBHWD000000000	SAMN20173777	PNUSAE076579	Escherichia coli
GCA_019251195.1	ABBIAU000000000	SAMN20174003	PNUSAE076581	Escherichia coli
GCA_019251235.1	ABBIAT000000000	SAMN20173886	PNUSAE076584	Escherichia coli
GCA_019250785.1	ABBIAC000000000	SAMN20173848	PNUSAE076578	Escherichia coli
GCA_019254005.1	ABBIFY000000000	SAMN20173633	PNUSAE076605	Escherichia coli
GCA_019253965.1	ABBIFX000000000	SAMN20173638	PNUSAE076598	Escherichia coli
GCA_019253945.1	ABBIFW000000000	SAMN20173858	PNUSAE076577	Escherichia coli
GCA_019253925.1	ABBIFT000000000	SAMN20173868	PNUSAE076613	Escherichia coli
GCA_019253905.1	ABBIFV000000000	SAMN20174005	PNUSAE076601	Escherichia coli
GCA_019253885.1	ABBIFU000000000	SAMN20173963	PNUSAE076582	Escherichia coli
GCA_019254665.1	ABBIGY000000000	SAMN20173775	PNUSAE076595	Escherichia coli
GCA_019242545.1	ABBHZK000000000	SAMN20173866	PNUSAE076576	Escherichia coli
GCA_044895805.1	ABWJIL000000000	SAMN44726132	GT25-0099	Escherichia coli
GCA_044895785.1	ABWJIK000000000	SAMN44726131	GT25-0093	Escherichia coli
GCA_044895745.1	ABWJII000000000	SAMN44726130	GT25-0092	Escherichia coli
GCA_041530265.1	ABUIPU000000000	SAMN43385617	GT25-0026	Escherichia coli
GCA_041527585.1	ABUIKX000000000	SAMN43385616	GT25-0005	Escherichia coli
GCA_041527565.1	ABUIKY000000000	SAMN43385618	GT25-0027	Escherichia coli
GCA_041527545.1	ABUIKW000000000	SAMN43385615	GT25-0003	Escherichia coli
GCA_041558815.1	ABUJFI000000000	SAMN43405786	GT25-0032	Escherichia coli
GCA_041733155.1	ABUKMQ000000000	SAMN43487285	GT25-0045	Escherichia coli
GCA_041779715.1	ABUMBQ000000000	SAMN43487286	GT25-0046	Escherichia coli
GCA_041779695.1	ABUMBR000000000	SAMN43487287	GT25-0053	Escherichia coli
GCA_040267035.1	ABTAOC000000000	SAMN41934908	GT24-0419	Escherichia coli
GCA_038489125.1	ABRXCJ000000000	SAMN41082058	GT24-0344	Escherichia coli
GCA_038488105.1	ABRXAG000000000	SAMN41082059	GT24-0348	Escherichia coli
GCA_038488425.1	ABRXBA000000000	SAMN41082060	GT24-0354	Escherichia coli
GCA_038488705.1	ABRXBN000000000	SAMN41082061	GT24-0357	Escherichia coli
GCA_038488085.1	ABRXAH000000000	SAMN41082057	GT24-0342	Escherichia coli
GCA_037982415.1	ABROYC000000000	SAMN40761539	GT24-0310	Escherichia coli
GCA_037982345.1	ABROYB000000000	SAMN40761540	GT24-0312	Escherichia coli
GCA_037982355.1	ABROXZ000000000	SAMN40761541	GT24-0318	Escherichia coli
GCA_037959305.1	ABRNSV000000000	SAMN40738933	GT24-0330	Escherichia coli
GCA_038019925.1	ABRPPU000000000	SAMN40761538	GT24-0307	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	85
Data volume, Mbytes	48465

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Escherichia coli

South Carolina Department of Health Escherichia coli Genome sequencing and assembly

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