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Accession: PRJNA648411 ID: 648411

Staphylococcus

Sequencing of clinical staphylococcal isolates from Alexandria, Egypt

The project aims to describe the population structure and molecular epidemiology of staphylococcal clinical isolates collected from Alexandria Main University Hospital (AMUH) in 2015. More...
AccessionPRJNA648411
Data TypeGenome sequencing and assembly
ScopeMultispecies
OrganismStaphylococcus[Taxonomy ID: 1279]
Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus
SubmissionRegistration date: 12-Jan-2021
Faculty of Pharmacy, Alexandria University
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)66
SRA Experiments66
Other datasets
BioSample66
Assembly66
Assembly details:
Assembly levelNumber of Assemblies
13
53
66
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_016621065.1ContigJAEOVY000000000SAMN15640992
AA60
GCA_016621245.1ContigJAEOVZ000000000SAMN15640993
AA61
GCA_016621195.1ContigJAEOWQ000000000SAMN15641010
AA92
GCA_016621185.1ScaffoldJAEOWS000000000SAMN15641012
AA94
GCA_016621165.1ScaffoldJAEOWU000000000SAMN15641014
AA99
GCA_016621835.1ContigJAEOVL000000000SAMN15640979
AA39
GCA_016621825.1ContigJAEOVK000000000SAMN15640978
AA36
GCA_016621795.1ContigJAEOVM000000000SAMN15640980
AA4
GCA_016621775.1ContigJAEOVH000000000SAMN15640975
AA32
GCA_016621765.1ContigJAEOVO000000000SAMN15640982
AA45
GCA_016621745.1ContigJAEOVG000000000SAMN15640974
AA31
GCA_016621705.1ContigJAEOVI000000000SAMN15640976
AA33
GCA_016621695.1ScaffoldJAEOWE000000000SAMN15640998
AA67
GCA_016621685.1ContigJAEOVJ000000000SAMN15640977
AA35
GCA_016621665.1ContigJAEOWH000000000SAMN15641001
AA70
GCA_016621645.1ContigJAEOVT000000000SAMN15640987
AA53
GCA_016621615.1ContigJAEOWD000000000SAMN15640997
AA65
GCA_016621595.1ScaffoldJAEOWG000000000SAMN15641000
AA69
GCA_016621585.1ContigJAEOVU000000000SAMN15640988
AA55
GCA_016621555.1ContigJAEOWB000000000SAMN15640995
AA63
GCA_016621535.1ContigJAEOWC000000000SAMN15640996
AA64
GCA_016621525.1ContigJAEOWA000000000SAMN15640994
AA62
GCA_016621505.1ScaffoldJAEOWF000000000SAMN15640999
AA68
GCA_016621485.1ContigJAEOUU000000000SAMN15640962
AA104
GCA_016621445.1ScaffoldJAEOWJ000000000SAMN15641003
AA77
GCA_016621435.1ContigJAEOWK000000000SAMN15641004
AA78
GCA_016621425.1ContigJAEOUS000000000SAMN15640960
AA101
GCA_016621395.1ScaffoldJAEOWP000000000SAMN15641009
AA91
GCA_016621385.1ContigJAEOWL000000000SAMN15641005
AA79
GCA_016621365.1ContigJAEOWI000000000SAMN15641002
AA76
GCA_016621335.1ScaffoldJAEOWT000000000SAMN15641013
AA95
GCA_016621305.1ContigJAEOVX000000000SAMN15640991
AA6
GCA_016620995.1ContigJAEOUR000000000SAMN15640959
AA1
GCA_016620985.1ContigJAEOUV000000000SAMN15640963
AA13
GCA_016620955.1ContigJAEOUW000000000SAMN15640964
AA14
GCA_016620935.1ContigJAEOUT000000000SAMN15640961
AA103
GCA_016620925.1ScaffoldJAEOUX000000000SAMN15640965
AA17
GCA_016620895.1ContigJAEOUY000000000SAMN15640966
AA18
GCA_016620885.1ContigJAEOUZ000000000SAMN15640967
AA2
GCA_016620855.1ContigJAEOVC000000000SAMN15640970
AA27
GCA_016620815.1ContigJAEOVE000000000SAMN15640972
AA3
GCA_016620825.1ContigJAEOVA000000000SAMN15640968
AA22
GCA_016620795.1ContigJAEOVD000000000SAMN15640971
AA29
GCA_016620785.1ContigJAEOVB000000000SAMN15640969
AA23
GCA_016620765.1ScaffoldJAEOVN000000000SAMN15640981
AA41
GCA_016620705.1ContigJAEOVQ000000000SAMN15640984
AA5
GCA_016620715.1ContigJAEOVF000000000SAMN15640973
AA30
GCA_016620685.1ContigJAEOVP000000000SAMN15640983
AA46
GCA_016620695.1ContigJAEOVR000000000SAMN15640985
AA51
GCA_016620665.1ContigJAEOVS000000000SAMN15640986
AA52
GCA_016620645.1ContigJAEOWN000000000SAMN15641007
AA80
GCA_016620605.1ContigJAEOWR000000000SAMN15641011
AA93
GCA_016620585.1ContigJAEOWM000000000SAMN15641006
AA8
GCA_016620565.1ContigJAEOVW000000000SAMN15640990
AA59
GCA_016620575.1ContigJAEOWO000000000SAMN15641008
AA87
GCA_016620545.1ContigJAEOVV000000000SAMN15640989
AA57
GCA_016621295.1ContigJAEOXD000000000SAMN15641023
AA84
GCA_016621285.1ContigJAEOXE000000000SAMN15641024
AA89
GCA_016621265.1ContigJAEOWV000000000SAMN15641015
AA12
GCA_016621145.1ScaffoldJAEOWY000000000SAMN15641018
AA42
GCA_016621105.1ContigJAEOXC000000000SAMN15641022
AA83
GCA_016621115.1ContigJAEOXA000000000SAMN15641020
AA73
GCA_016621085.1ScaffoldJAEOXB000000000SAMN15641021
AA82
GCA_016621215.1ContigJAEOWZ000000000SAMN15641019
AA48
GCA_016621035.1ContigJAEOWW000000000SAMN15641016
AA34
GCA_016621015.1ScaffoldJAEOWX000000000SAMN15641017
AA40
SRA Data Details
ParameterValue
Data volume, Gbases26
Data volume, Mbytes11884

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    Sequencing of clinical staphylococcal isolates from Alexandria, Egypt
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