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Accession: PRJNA606200 ID: 606200

Escherichia coli

O80 Escherichia coli Genome sequencing and assembly

See Genome Information for Escherichia coli
O80 Escherichia coli genomes
AccessionPRJNA606200
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
PublicationsHabets A et al., "Genetic characterization of Shigatoxigenic and enteropathogenic Escherichia coli O80:H2 from diarrhoeic and septicaemic calves and relatedness to human Shigatoxigenic E. coli O80:H2.", J Appl Microbiol, 2021 Jan;130(1):258-264
SubmissionRegistration date: 13-Jul-2020
University of Liege
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)52
Publications
PubMed1
Other datasets
BioSample52
Assembly52
Assembly details:
Assembly levelNumber of Assemblies
1
51
52
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_013413455.1ContigJABUPP000000000SAMN14087011
EH3318
GCA_013413395.1ContigJABUPR000000000SAMN14087013
EH3322
GCA_013413375.1ContigJABUPS000000000SAMN13876256
EH2882
GCA_013413285.1ContigJABUPV000000000SAMN14087033
EH3310
GCA_013413275.1ContigJABUPW000000000SAMN14087039
EH3311
GCA_013413235.1ContigJABUPX000000000SAMN14087040
EH3315
GCA_013413245.1ContigJABUPY000000000SAMN14087041
EH3317
GCA_013413345.1ContigJABUPT000000000SAMN13876258
EH2883
GCA_013413335.1ContigJABUQL000000000SAMN14087455
EH2786
GCA_013413315.1ContigJABUPU000000000SAMN14087032
EH3307
GCA_013413215.1ContigJABUQA000000000SAMN14087147
EH3154
GCA_013413175.1ContigJABUQB000000000SAMN14087149
EH3155
GCA_013413165.1ContigJABUPZ000000000SAMN14087146
EH3320
GCA_013413065.1ContigJABUQI000000000SAMN14087253
EH2436
GCA_013413045.1ContigJABUQH000000000SAMN14087245
EH2400
GCA_013413055.1ContigJABUQG000000000SAMN14087244
EH2262
GCA_013413035.1ContigJABUQF000000000SAMN14087243
EH1764
GCA_013413145.1ContigJABUQD000000000SAMN14087161
EH3338
GCA_013413135.1ContigJABUQC000000000SAMN14087151
EH3160
GCA_013413115.1ContigJABUQE000000000SAMN14087242
EH1752
GCA_013413415.1ContigJABUPQ000000000SAMN14087012
EH3319
GCA_013413015.1ContigJABUQJ000000000SAMN14087304
EH2549
GCA_013412965.1ContigJABUQK000000000SAMN14087454
EH2644
GCA_013412935.1ScaffoldJABUQN000000000SAMN14090730
EH3045
GCA_013412955.1ContigJABUQM000000000SAMN14087456
EH2808
GCA_013412945.1ContigJABUQP000000000SAMN14090732
EH3168
GCA_013412895.1ContigJABUQQ000000000SAMN14090733
EH3172
GCA_013412825.1ContigJABUQR000000000SAMN14090734
EH3173
GCA_013412845.1ContigJABUQT000000000SAMN14090736
EH3205
GCA_013412815.1ContigJABUQU000000000SAMN14090737
EH3212
GCA_013412835.1ContigJABUQS000000000SAMN14090735
EH3180
GCA_013412765.1ContigJABUQV000000000SAMN14090738
EH3257
GCA_013412755.1ContigJABUQW000000000SAMN14090739
EH3278
GCA_013412915.1ContigJABUQO000000000SAMN14090731
EH3138
GCA_013414005.1ContigJABUPF000000000SAMN14086251
EH3301
GCA_013413995.1ContigJABUPG000000000SAMN14086255
EH3303
GCA_013414165.1ContigJABUOX000000000SAMN13876229
EH2850
GCA_013414155.1ContigJABUOY000000000SAMN13876233
EH2851
GCA_013414135.1ContigJABUOZ000000000SAMN13876234
EH2846
GCA_013414105.1ContigJABUPA000000000SAMN13876235
EH2845
GCA_013414095.1ContigJABUPB000000000SAMN14087589
EH2849
GCA_013414045.1ContigJABUPC000000000SAMN13876249
EH2848
GCA_013414055.1ContigJABUPD000000000SAMN14086249
EH3299
GCA_013414035.1ContigJABUPE000000000SAMN14086250
EH3300
GCA_013413965.1ContigJABUPH000000000SAMN14086265
EH3304
GCA_013413955.1ContigJABUPI000000000SAMN14086266
EH3305
GCA_013413925.1ContigJABUPJ000000000SAMN14086268
EH3306
GCA_013413915.1ContigJABUPK000000000SAMN14086269
EH3308
GCA_013413895.1ContigJABUPL000000000SAMN14086270
EH3309
GCA_013413875.1ContigJABUPM000000000SAMN14086995
EH3312
GCA_013413825.1ContigJABUPN000000000SAMN14087009
EH3313
GCA_013413835.1ContigJABUPO000000000SAMN14087010
EH3314

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    O80 Escherichia coli Genome sequencing and assembly
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