ID 588446 - BioProject

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Accession: PRJNA588446 ID: 588446

Diversity genetic of Salmonella Typhimurium isolates in Tunisia

Typhimurium is one of the main Salmonella serovar responsible for non-typhoidal gastro-enteritis in Tunisia. More...

Accession	PRJNA588446
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Ktari S et al., "Genetic diversity of clinical Salmonella enterica serovar Typhimurium in a university hospital of south Tunisia, 2000-2013.", Infect Genet Evol, 2020 Nov;85:104436
Submission	Registration date: 8-Nov-2019 University of Sfax, Faculty of Medicin Sfax
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	88
SRA Experiments	6
Publications
PubMed	1
Other datasets
BioSample	88
Assembly	88

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

88
88

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_013422795.1	WSAL00000000	SAMN13112063	B3215	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013422805.1	WSAM00000000	SAMN13112010	B3172	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411545.1	WRYP00000000	SAMN13111988	R1213	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411245.1	WRYA00000000	SAMN13112008	X1220	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411235.1	WRYB00000000	SAMN13111985	X 917	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411195.1	WRXY00000000	SAMN13112025	X136	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411185.1	WRXZ00000000	SAMN13112001	X135	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411175.1	WRXX00000000	SAMN13111993	X1419	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411155.1	WRXW00000000	SAMN13111994	X658	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411135.1	WRXV00000000	SAMN13112000	Z209	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411085.1	WRXU00000000	SAMN13111990	Z300	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411095.1	WRXT00000000	SAMN13112041	Z305	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411075.1	WRXQ00000000	SAMN13112052	GR890	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411875.1	WRZG00000000	SAMN13112056	J436	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411375.1	WRYJ00000000	SAMN13112037	B2965	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411345.1	WRYG00000000	SAMN13112054	S112	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411315.1	WRYF00000000	SAMN13112048	S793	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411295.1	WRYD00000000	SAMN13112009	UB85	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411285.1	WRYC00000000	SAMN13112057	W392	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411275.1	WRYE00000000	SAMN13112020	T118	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411505.1	WRYQ00000000	SAMN13112055	PY89	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411485.1	WRYN00000000	SAMN13112034	B1532	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411495.1	WRYO00000000	SAMN13111997	R1502	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411475.1	WRYM00000000	SAMN13112038	R1864	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411425.1	WRYK00000000	SAMN13112030	R2953	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411415.1	WRYL00000000	SAMN13112043	R2107	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411405.1	WRYI00000000	SAMN13112016	R4934	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411395.1	WRYH00000000	SAMN13112060	RT323	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411975.1	WRZL00000000	SAMN13112002	G700	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411945.1	WRZJ00000000	SAMN13112049	CR516	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411935.1	WRZK00000000	SAMN13112026	G790	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411905.1	WRZH00000000	SAMN13111986	H466	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411895.1	WRZI00000000	SAMN13112050	GR560	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411835.1	WRZF00000000	SAMN13112066	I755	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411825.1	WRZD00000000	SAMN13112058	NP1242	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411795.1	WRZC00000000	SAMN13111989	NP1268	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411785.1	WRZE00000000	SAMN13112059	J364	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411775.1	WRZB00000000	SAMN13112021	NP2113	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411715.1	WRYZ00000000	SAMN13112007	N4745	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411705.1	WRYY00000000	SAMN13112045	NP768	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411725.1	WRYX00000000	SAMN13112061	NP999	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411685.1	WRZA00000000	SAMN13112023	NP2490	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411675.1	WRYW00000000	SAMN13112071	O178	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411615.1	WRYV00000000	SAMN13112029	O366	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411595.1	WRYS00000000	SAMN13112069	PL1264	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411585.1	WRYT00000000	SAMN13112053	O52	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411605.1	WRYU00000000	SAMN13112022	O446	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411575.1	WRYR00000000	SAMN13112042	PL1383	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412745.1	WSAY00000000	SAMN13112032	B1161	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412645.1	WSAT00000000	SAMN13112044	B2227	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412655.1	WSAX00000000	SAMN13112040	B1186	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412615.1	WSAW00000000	SAMN13112036	B1417	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412635.1	WSAV00000000	SAMN13111998	B1758	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412625.1	WSAU00000000	SAMN13112062	B1911	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412595.1	WSAS00000000	SAMN13112011	B2366	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412535.1	WSAP00000000	SAMN13111996	B3014	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412545.1	WSAR00000000	SAMN13112033	B2498	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412525.1	WSAQ00000000	SAMN13112039	B2995	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412515.1	WSAO00000000	SAMN13112006	B301	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412445.1	WRZM00000000	SAMN13111987	G356	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412415.1	WSAK00000000	SAMN13112072	B3253	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412425.1	WSAI00000000	SAMN13112005	B3650	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412435.1	WSAJ00000000	SAMN13112064	B3478	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412345.1	WSAG00000000	SAMN13112012	B3801	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412335.1	WSAF00000000	SAMN13112015	B3919	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412325.1	WSAE00000000	SAMN13112014	B4381	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412315.1	WSAD00000000	SAMN13112013	B4505	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412715.1	WSAZ00000000	SAMN13112024	A692	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412495.1	WSAN00000000	SAMN13112070	B3036	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412395.1	WSAH00000000	SAMN13112046	B3731	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412295.1	WSAC00000000	SAMN13112067	B4931	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412235.1	WRZZ00000000	SAMN13112018	B5285	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412215.1	WRZY00000000	SAMN13112065	C1030	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412245.1	WSAB00000000	SAMN13112068	B4967	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412205.1	WSAA00000000	SAMN13112019	B5146	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412195.1	WRZX00000000	SAMN13112035	C1633	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412135.1	WRZW00000000	SAMN13112027	C2225	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412115.1	WRZU00000000	SAMN13111995	C3378	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412095.1	WRZT00000000	SAMN13112017	C4310	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412125.1	WRZV00000000	SAMN13112051	C2703	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412105.1	WRZS00000000	SAMN13112028	B4682	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412075.1	WRZR00000000	SAMN13112031	CR484	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412035.1	WRZQ00000000	SAMN13111999	D2421	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412015.1	WRZP00000000	SAMN13111991	D545	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411995.1	WRZN00000000	SAMN13112003	B3497	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013412005.1	WRZO00000000	SAMN13112047	G247	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411045.1	WRXR00000000	SAMN13111992	Z652	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_013411035.1	WRXS00000000	SAMN13112004	Z553	Salmonella enterica subsp. enterica serovar Typhimurium

SRA Data Details

Parameter	Value
Data volume, Gbases	73
Data volume, Mbytes	32613

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Diversity genetic of Salmonella Typhimurium isolates in Tunisia

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