ID 578838 - BioProject

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Accession: PRJNA578838 ID: 578838

Analysis of Shigella spp. collected in Bern, Switzerland.

In this study we aimed to characterize third-generation cephalosporins-resistant plasmids of Shigella spp. More...

Accession	PRJNA578838
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Campos-Madueno EI et al., "Rapid Increase of CTX-M-Producing Shigella sonnei Isolates in Switzerland Due to Spread of Common Plasmids and International Clones.", Antimicrob Agents Chemother, 2020 Sep 21;64(10)
Submission	Registration date: 22-Oct-2019 University of Bern

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	27
Publications
PubMed	1
PMC	1
Other datasets
BioSample	27
Assembly	27

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

27
27

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_013150945.1	WHSI00000000	SAMN13075196	5908.2	Shigella flexneri
GCA_013150935.1	WHSJ00000000	SAMN13075195	6904.27	Shigella sonnei
GCA_013150925.1	WHSK00000000	SAMN13075194	6607.69	Shigella sonnei
GCA_013154895.1	JAAMNE000000000	SAMN14133026	7111.23	Shigella sonnei
GCA_013154865.1	JAATWD000000000	SAMN10519737	LC1477/18	Shigella sonnei
GCA_013154855.1	JAAMNC000000000	SAMN14133028	7103.58	Shigella sonnei
GCA_013154835.1	JAAMND000000000	SAMN14133027	7109.28	Shigella sonnei
GCA_013154815.1	JAAMNB000000000	SAMN14133029	7103.28	Shigella sonnei
GCA_013154795.1	JAAMMZ000000000	SAMN14133031	6502.32	Shigella sonnei
GCA_013154765.1	JAAMNA000000000	SAMN14133030	7001.38	Shigella sonnei
GCA_013154755.1	JAAMMY000000000	SAMN14133032	6412.75	Shigella sonnei
GCA_013154725.1	JAAMMX000000000	SAMN14133033	6407.57	Shigella sonnei
GCA_013154715.1	JAAMMV000000000	SAMN14133035	6105.15	Shigella sonnei
GCA_013154695.1	JAAMMW000000000	SAMN14133034	6110.62	Shigella sonnei
GCA_013154665.1	JAAMMT000000000	SAMN14133037	19.0820.1561	Shigella sonnei
GCA_013154655.1	JAAMMS000000000	SAMN14133038	19.0821.3486	Shigella sonnei
GCA_013154635.1	JAAMMU000000000	SAMN14133036	6101.40	Shigella sonnei
GCA_013154605.1	JAAMMQ000000000	SAMN14133040	509.1022	Shigella sonnei
GCA_013154595.1	JAAMMR000000000	SAMN14133039	19.0822.3296	Shigella sonnei
GCA_013154575.1	JAAMMP000000000	SAMN14133041	0401930105	Shigella sonnei
GCA_013154545.1	JAAMMO000000000	SAMN14133042	0401952027	Shigella sonnei
GCA_013154535.1	JAAMMM000000000	SAMN14133044	1205.3131	Shigella sonnei
GCA_013154505.1	JAAMML000000000	SAMN14133045	09163633	Shigella sonnei
GCA_013154485.1	JAAMMN000000000	SAMN14133043	L4094	Shigella sonnei
GCA_013154475.1	JAAMMK000000000	SAMN14133046	7111.69	Shigella sonnei
GCA_013154435.1	JAAMMJ000000000	SAMN14133047	3123885	Shigella sonnei
GCA_013154415.1	JAAMMI000000000	SAMN14133048	19.1125.3493	Shigella sonnei

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Analysis of Shigella spp. collected in Bern, Switzerland.

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