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Accession: PRJNA577946 ID: 577946

Xenopus tropicalis strain:Nigerian (tropical clawed frog)

Xenopus tropicalis v10 Genome sequencing and assembly

See Genome Information for Xenopus tropicalis
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161 additional projects are related by organism.
Xenopus tropicalis v10 genome sequencing and assembly
AccessionPRJNA577946
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismXenopus tropicalis[Taxonomy ID: 8364]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana; Xenopus tropicalis
Publications
  • Hellsten U et al., "The genome of the Western clawed frog Xenopus tropicalis.", Science, 2010 Apr 30;328(5978):633-6
  • Published online: Mitros T et al., "A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis", Developmental Biology, 2019;452(1):8-20
Grants
  • "Comparative Genetics and Genomics of Xenopus" (Grant ID R01 GM086321, National Institute of General Medical Sciences)
  • "Systematic improvement of Xenopus gene annotations and reference genomes" (Grant ID R01 HD080708, National Institute of Child Health & Human Development)
SubmissionRegistration date: 16-Oct-2019
University of California, Berkeley
RelevanceModel Organism
Locus Tag PrefixXENTR
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)71
WGS master1
SRA Experiments70
Protein Sequences62998
Publications
PubMed1
PMC1
Other datasets
BioSample1
Assembly1
Assembly details:
AssemblyLevelWGSChrsBioSampleTaxonomy
GCA_000004195.4ChromosomeAAMC00000000
10
SAMN13041969
Xenopus tropicalis
SRA Data Details
ParameterValue
Data volume, Gbases451
Data volume, Tbytes0.61

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