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Genome Information for Mustela erminea
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The Stoat (known as the short-tailed weasel in North America) is one of the smallest true carnivores. This assembly has been produced as part of the G10K-VGP project. Sequencing was conducted with Pacific long reads, Bionano optical maps, and 10X Genomics libraries at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo, HiC at Arima Genomics, and Illumina sequencing. Genome assembly was conducted by the Marcela Uliano da Silva, and supervised by Arang Rhie, using the VGP 1.6 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. Funding was raised by Andrew Veale from the Biological Heritage Science Challenge and Predator Free 2050. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/
| Accession | PRJNA562223 |
| Type | Umbrella project |
| Organism | Mustela erminea[Taxonomy ID: 36723] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela; Mustela erminea |
| Submission | Registration date: 26-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 74474 |
| WGS master | 2 |
| Transcript | 74332 |
| SRA Experiments | 28 |
| Protein Sequences | 60430 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Contigs SRA or Trace Total |
2
1
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA561930 | Contigs | Mustela erminea | Mustela erminea (Stoat) genome, mMusErm1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA561931 | Chromosomes | Mustela erminea | Mustela erminea (Stoat) genome, mMusErm1, primary haplotype (Vertebrate Genomes Project) | | PRJNA602914 | Chromosomes | Mustela erminea | Mustela erminea cultivar:mMusErm1 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1008644 | SRA or Trace | Mustela erminea (Stoat) genome, mMusErm1, sequence data | Mustela erminea (Stoat) genome, mMusErm1, sequence data (G10K) |
|